BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:44.5 nTPM
HPA:44.5 nTPM
GTEx:39.2 nTPM
FANTOM5:46.4 Scaled Tags Per Million

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 44.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 40.3
1857 Female, age 85, left hemisphere 42.4
2290 Female, age 72, unknown 41.7
2481 Female, age 94, left hemisphere 41.3
2846 Female, age 79, unknown 40.8
1781 Male, age 74, unknown 40.7
1854 Male, age 80, left hemisphere 40.3
2289 Male, age 61, right hemisphere 38.2
2288 Male, age 75, left hemisphere 37.1
Claustrum
nTPM: 42.5
2198 Male, age 80, both hemispheres 44.3
2568 Male, age 61, both hemispheres 44.2
2645 Female, age 72, unknown 43.6
2284 Female, age 91, both hemispheres 43.4
2491 Male, age 75, both hemispheres 42.6
1956 Male, age 74, unknown 41.6
2292 Female, age 85, both hemispheres 41.3
2392 Female, age 94, both hemispheres 40.8
2196 Female, age 79, unknown 40.6
Globus pallidus, externus
nTPM: 42.0
1996 Male, age 80, right hemisphere 43.5
2772 Female, age 79, unknown 42.9
2395 Male, age 75, both hemispheres 42.3
2646 Male, age 61, right hemisphere 41.6
2567 Female, age 72, unknown 39.6
Globus pallidus, internus
nTPM: 41.4
2483 Female, age 94, right hemisphere 44.1
2287 Male, age 75, right hemisphere 42.5
2566 Female, age 72, unknown 41.3
2778 Female, age 91, both hemispheres 40.9
1818 Male, age 74, unknown 40.8
2111 Female, age 85, right hemisphere 40.4
2037 Male, age 80, right hemisphere 39.7
Nucleus accumbens
nTPM: 40.5
1806 Female, age 85, left hemisphere 42.7
1783 Male, age 74, unknown 42.6
2824 Male, age 61, right hemisphere 41.3
1856 Female, age 91, right hemisphere 40.6
2286 Male, age 75, left hemisphere 40.0
2732 Male, age 80, right hemisphere 39.3
2698 Female, age 72, unknown 39.2
2391 Female, age 94, left hemisphere 38.6
Nucleus basalis of Meynert
nTPM: 40.4
2569 Male, age 61, both hemispheres 43.6
2484 Female, age 94, left hemisphere 40.3
2393 Male, age 80, right hemisphere 39.3
2821 Male, age 75, both hemispheres 38.5
Nucleus of the diagonal band
nTPM: 44.5
2775 Male, age 80, right hemisphere 48.1
1812 Female, age 91, both hemispheres 47.5
2029 Male, age 61, right hemisphere 44.6
2195 Female, age 85, both hemispheres 43.3
1979 Male, age 74, unknown 39.2
Olfactory tubercle
nTPM: 44.2
1846 Male, age 80, right hemisphere 46.8
2487 Female, age 94, left hemisphere 45.2
1998 Female, age 91, both hemispheres 43.2
2856 Male, age 75, right hemisphere 41.7
Putamen
nTPM: 40.2
2647 Male, age 75, left hemisphere 44.2
2482 Female, age 94, left hemisphere 41.3
1937 Female, age 91, right hemisphere 40.3
1838 Male, age 80, right hemisphere 39.4
2466 Female, age 79, unknown 39.1
1829 Male, age 74, unknown 38.4
2489 Female, age 72, unknown 38.4
Septal nuclei
nTPM: 42.9
1960 Male, age 74, unknown 47.1
2031 Female, age 72, unknown 45.8
2059 Female, age 85, both hemispheres 44.1
2009 Female, age 91, both hemispheres 42.4
2394 Male, age 61, left hemisphere 41.3
2629 Female, age 94, right hemisphere 41.3
2199 Male, age 80, right hemisphere 38.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 39.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 34.9
Samples: 246

Max nTPM: 57.8
Min nTPM: 19.9
Std nTPM: 6.0
Median nTPM: 34.6
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 57.8
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 53.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 51.7
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 50.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 49.7
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 48.6
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 47.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 46.4
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 45.8
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 45.7
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 45.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 39.2
Samples: 246

Max nTPM: 58.6
Min nTPM: 13.5
Std nTPM: 7.0
Median nTPM: 39.6
GTEX-13N2G-0011-R6b-SM-5MR3P 60-69 years, male 58.6
GTEX-18A6Q-0011-R6a-SM-7LG6R 60-69 years, male 57.0
GTEX-ZDXO-0011-R6a-SM-4WWCT 60-69 years, male 55.5
GTEX-13QJC-0011-R6a-SM-5S2VI 60-69 years, female 54.8
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 54.7
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 54.1
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 54.1
GTEX-1JJEA-0011-R6a-SM-EXUS1 60-69 years, male 52.9
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 52.6
GTEX-13FLV-0011-R6a-SM-5KLZ4 50-59 years, male 51.6
GTEX-1EX96-0011-R6a-SM-9OSVV 50-59 years, male 51.0
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Brain - Putamen (basal ganglia)
Average nTPM: 35.3
Samples: 205

Max nTPM: 51.9
Min nTPM: 20.8
Std nTPM: 6.0
Median nTPM: 34.9
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 51.9
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 51.4
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 51.0
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 50.9
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 50.9
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 49.6
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 48.8
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 48.4
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 47.7
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 46.8
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 46.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 46.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 31.2
FF:10164-103B2 76 years, female 31.2
Globus pallidus
Scaled Tags Per Million: 29.0
FF:10161-103A8 76 years, female 30.5
FF:10175-103C4 60 years, female 27.6
Nucleus accumbens
Scaled Tags Per Million: 46.4
FF:10037-101F1 23-56 years, mixed 46.4
Putamen
Scaled Tags Per Million: 31.6
FF:10176-103C5 60 years, female 31.6

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The Human Protein Atlas

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