HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:24.7 nTPM
HPA:24.7 nTPM
GTEx:21.9 nTPM
FANTOM5:38.2 Scaled Tags Per Million
Pig:46.4 nTPM
Mouse:79.6 nTPM
Allen mouse:3.2 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA022434Antibody HPA022953Antibody HPA022959Antibody HPA028758Antibody CAB007783
Glial cells LowNot detectedNot detectedNot detectedHigh
Neuronal cells MediumMediumLowMediumMedium











HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 24.7
Sample id Sample description nTPM
Hippocampus
nTPM: 21.0
1898 Male, age 80, left hemisphere 26.3
2621 Female, age 67, right hemisphere 23.7
1855 Male, age 76, left hemisphere 22.6
2148 Female, age 91, left hemisphere 19.5
2529 Female, age 94, left hemisphere 17.4
1911 Female, age 85, right hemisphere 16.5
Dentate gyrus
nTPM: 22.9
2010 Male, age 76, both hemispheres 27.9
2530 Female, age 94, left hemisphere 25.8
2528 Male, age 74, both hemispheres 23.0
1927 Female, age 91, both hemispheres 22.6
2246 Female, age 85, both hemispheres 19.7
2531 Female, age 67, both hemispheres 18.2
Entorhinal gyrus
nTPM: 19.7
2764 Male, age 80, right hemisphere 22.8
2613 Female, age 94, left hemisphere 22.1
1938 Female, age 85, left hemisphere 20.5
2117 Female, age 91, right hemisphere 18.9
1787 Male, age 76, left hemisphere 18.4
2686 Male, age 75, right hemisphere 15.5
Hippocampus, CA1
nTPM: 24.7
2749 Male, age 80, left hemisphere 34.4
2045 Male, age 76, both hemispheres 28.2
1873 Female, age 85, both hemispheres 21.6
2082 Female, age 91, right hemisphere 20.2
2527 Male, age 74, both hemispheres 19.1
Hippocampus, CA2
nTPM: 21.8
2249 Male, age 74, both hemispheres 25.8
1963 Male, age 80, left hemisphere 23.6
2437 Female, age 94, left hemisphere 23.5
1892 Male, age 76, both hemispheres 23.1
2113 Female, age 91, right hemisphere 17.9
1940 Female, age 85, left hemisphere 17.2
Hippocampus, CA3
nTPM: 21.1
2436 Male, age 74, both hemispheres 26.7
2620 Female, age 94, left hemisphere 24.9
1867 Male, age 76, both hemispheres 21.5
2137 Male, age 80, left hemisphere 20.1
1891 Female, age 85, both hemispheres 16.8
2861 Female, age 67, both hemispheres 16.7
Parahippocampal cortex
nTPM: 19.4
1850 Male, age 80, both hemispheres 22.3
2693 Female, age 94, both hemispheres 21.9
2250 Female, age 67, right hemisphere 21.3
2692 Male, age 74, both hemispheres 19.7
1933 Female, age 85, both hemispheres 19.5
2018 Male, age 76, both hemispheres 19.5
2532 Female, age 72, left hemisphere 19.5
2245 Female, age 91, both hemispheres 18.5
1990 Female, age 91, right hemisphere 16.5
2622 Female, age 67, right hemisphere 15.1
Perirhinal gyrus
nTPM: 21.3
1847 Female, age 91, left hemisphere 25.1
2521 Female, age 94, right hemisphere 24.0
1794 Male, age 80, right hemisphere 21.9
1841 Female, age 85, right hemisphere 18.4
2848 Male, age 76, right hemisphere 17.0
Subiculum
nTPM: 19.4
2438 Female, age 94, left hemisphere 23.7
1901 Male, age 80, both hemispheres 20.3
2729 Female, age 91, right hemisphere 19.2
1977 Female, age 85, both hemispheres 18.2
2619 Male, age 74, both hemispheres 18.0
2042 Male, age 76, both hemispheres 17.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 21.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 21.9
Samples: 197

Max nTPM: 42.3
Min nTPM: 11.0
Std nTPM: 5.1
Median nTPM: 21.4
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 42.3
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 37.6
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 36.1
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 35.5
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 33.7
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 33.6
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 33.5
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 33.2
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 31.7
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 30.8
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 30.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 38.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 38.2
FF:10169-103B7 60 years, female 42.9
FF:10153-102I9 76 years, female 33.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 46.4
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 46.4
Samples: 4

Max nTPM: 64.2
Min nTPM: 32.4
Sample A Female 64.2
Sample B Female 50.9
Sample C Male 38.2
Sample D Male 32.4
Entorhinal cortex
nTPM: 37.8
Samples: 4

Max nTPM: 40.6
Min nTPM: 33.2
Sample A Female 40.6
Sample B Female 37.8
Sample C Male 39.7
Sample D Male 33.2
Subiculum
nTPM: 42.0
Samples: 4

Max nTPM: 50.9
Min nTPM: 36.7
Sample A Female 50.9
Sample B Female 36.7
Sample C Male 41.2
Sample D Male 39.2
Ventral hippocampus
nTPM: 45.4
Samples: 4

Max nTPM: 56.8
Min nTPM: 30.8
Sample A Female 51.3
Sample B Female 30.8
Sample C Male 56.8
Sample D Male 42.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 79.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 79.6
Samples: 4

Max nTPM: 83.8
Min nTPM: 77.0
Sample A Male 77.0
Sample B Male 80.2
Sample C Female 77.5
Sample D Female 83.8
Hippocampal formation
nTPM: 70.5
Samples: 4

Max nTPM: 73.2
Min nTPM: 66.8
Sample A Male 66.8
Sample B Male 69.2
Sample C Female 73.2
Sample D Female 72.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 3.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.2
77620447 Antisense, RP_070129_03_C11, Mouse strain C57BL/6J (56 days, male) 3.2

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