BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:48.0 nTPM
HPA:48.0 nTPM
GTEx:78.5 nTPM
FANTOM5:31.9 Scaled Tags Per Million
Pig:19.4 nTPM
Mouse:45.8 nTPM
Allen mouse:3.5 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA049317
Glial cells Not detected
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 48.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 48.0
2288 Male, age 75, left hemisphere 53.5
2289 Male, age 61, right hemisphere 51.6
2846 Female, age 79, unknown 50.2
2290 Female, age 72, unknown 49.9
1781 Male, age 74, unknown 48.9
1857 Female, age 85, left hemisphere 48.1
1854 Male, age 80, left hemisphere 44.2
2481 Female, age 94, left hemisphere 37.7
Claustrum
nTPM: 43.9
2284 Female, age 91, both hemispheres 46.4
2491 Male, age 75, both hemispheres 46.0
2292 Female, age 85, both hemispheres 45.4
2568 Male, age 61, both hemispheres 44.8
1956 Male, age 74, unknown 44.1
2198 Male, age 80, both hemispheres 43.9
2645 Female, age 72, unknown 42.3
2196 Female, age 79, unknown 41.9
2392 Female, age 94, both hemispheres 40.4
Globus pallidus, externus
nTPM: 35.6
2646 Male, age 61, right hemisphere 38.6
2395 Male, age 75, both hemispheres 35.6
2567 Female, age 72, unknown 34.7
1996 Male, age 80, right hemisphere 34.5
2772 Female, age 79, unknown 34.5
Globus pallidus, internus
nTPM: 35.6
2111 Female, age 85, right hemisphere 39.1
2287 Male, age 75, right hemisphere 36.0
2778 Female, age 91, both hemispheres 35.8
2483 Female, age 94, right hemisphere 35.6
2566 Female, age 72, unknown 35.1
2037 Male, age 80, right hemisphere 34.3
1818 Male, age 74, unknown 33.3
Nucleus accumbens
nTPM: 43.9
1783 Male, age 74, unknown 53.0
1806 Female, age 85, left hemisphere 50.3
2286 Male, age 75, left hemisphere 46.5
2824 Male, age 61, right hemisphere 43.1
1856 Female, age 91, right hemisphere 42.7
2698 Female, age 72, unknown 39.4
2391 Female, age 94, left hemisphere 38.4
2732 Male, age 80, right hemisphere 37.8
Nucleus basalis of Meynert
nTPM: 42.3
2484 Female, age 94, left hemisphere 46.5
2821 Male, age 75, both hemispheres 42.4
2393 Male, age 80, right hemisphere 41.0
2569 Male, age 61, both hemispheres 39.2
Nucleus of the diagonal band
nTPM: 40.5
2195 Female, age 85, both hemispheres 43.4
2029 Male, age 61, right hemisphere 42.9
2775 Male, age 80, right hemisphere 40.7
1812 Female, age 91, both hemispheres 39.4
1979 Male, age 74, unknown 36.0
Olfactory tubercle
nTPM: 42.0
2487 Female, age 94, left hemisphere 45.7
2856 Male, age 75, right hemisphere 42.3
1998 Female, age 91, both hemispheres 41.9
1846 Male, age 80, right hemisphere 38.2
Putamen
nTPM: 47.4
2489 Female, age 72, unknown 53.0
2466 Female, age 79, unknown 50.2
1829 Male, age 74, unknown 48.8
1838 Male, age 80, right hemisphere 47.5
1937 Female, age 91, right hemisphere 47.2
2647 Male, age 75, left hemisphere 44.4
2482 Female, age 94, left hemisphere 40.4
Septal nuclei
nTPM: 40.8
1960 Male, age 74, unknown 48.1
2059 Female, age 85, both hemispheres 45.1
2629 Female, age 94, right hemisphere 41.6
2031 Female, age 72, unknown 40.8
2009 Female, age 91, both hemispheres 39.4
2394 Male, age 61, left hemisphere 37.2
2199 Male, age 80, right hemisphere 33.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 78.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 73.3
Samples: 246

Max nTPM: 152.4
Min nTPM: 20.5
Std nTPM: 23.1
Median nTPM: 72.8
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 152.4
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 144.4
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 142.9
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 132.4
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 123.5
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 116.1
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 115.6
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 114.6
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 114.6
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 114.4
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 114.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 71.2
Samples: 246

Max nTPM: 208.2
Min nTPM: 9.8
Std nTPM: 28.3
Median nTPM: 66.6
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 208.2
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 162.2
GTEX-1GMRU-0011-R6b-SM-A9G3B 50-59 years, male 152.2
GTEX-13FHP-0011-R6b-SM-5LZY6 50-59 years, male 146.1
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 132.3
GTEX-13SLW-0011-R6a-SM-5O9BH 70-79 years, male 130.2
GTEX-145LU-0011-R6a-SM-5S2V6 50-59 years, male 129.5
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 129.1
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 126.9
GTEX-1IKK5-0011-R6b-SM-A9SLY 60-69 years, male 126.5
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 125.1
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Brain - Putamen (basal ganglia)
Average nTPM: 78.5
Samples: 205

Max nTPM: 136.8
Min nTPM: 22.9
Std nTPM: 25.7
Median nTPM: 79.2
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 136.8
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 134.9
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 134.3
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 133.4
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 131.5
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 130.3
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 128.5
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 127.0
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 122.2
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 119.0
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 118.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 31.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 31.9
FF:10164-103B2 76 years, female 31.9
Globus pallidus
Scaled Tags Per Million: 18.6
FF:10161-103A8 76 years, female 22.2
FF:10175-103C4 60 years, female 14.9
Nucleus accumbens
Scaled Tags Per Million: 19.6
FF:10037-101F1 23-56 years, mixed 19.6
Putamen
Scaled Tags Per Million: 28.4
FF:10176-103C5 60 years, female 28.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 19.4
Pig sample Sample description nTPM
Caudate
nTPM: 18.6
Samples: 4

Max nTPM: 21.5
Min nTPM: 15.2
Sample A Female 15.2
Sample B Female 20.7
Sample C Male 21.5
Sample D Male 16.8
Putamen
nTPM: 19.4
Samples: 4

Max nTPM: 23.2
Min nTPM: 16.4
Sample A Female 16.4
Sample B Female 18.0
Sample C Male 20.1
Sample D Male 23.2
Septum
nTPM: 12.3
Samples: 4

Max nTPM: 13.8
Min nTPM: 10.4
Sample A Female 13.6
Sample B Female 13.8
Sample C Male 11.5
Sample D Male 10.4
Ventral pallidum
nTPM: 15.6
Samples: 4

Max nTPM: 17.9
Min nTPM: 12.7
Sample A Female 12.7
Sample B Female 14.9
Sample C Male 17.0
Sample D Male 17.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 45.8
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 45.8
Samples: 4

Max nTPM: 52.3
Min nTPM: 38.6
Sample A Male 45.4
Sample B Male 52.3
Sample C Female 38.6
Sample D Female 46.8
Septum
nTPM: 26.2
Samples: 4

Max nTPM: 27.8
Min nTPM: 22.1
Sample A Male 27.7
Sample B Male 27.8
Sample C Female 27.0
Sample D Female 22.1
Ventral forebrain
nTPM: 35.7
Samples: 4

Max nTPM: 40.3
Min nTPM: 28.7
Sample A Male 40.3
Sample B Male 28.7
Sample C Female 38.4
Sample D Female 35.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 3.5
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 3.5
70593277 Antisense, RP_050407_01_G05, Mouse strain C57BL/6J (56 days, male) 3.5
Pallidum
Expression energy: 2.0
70593277 Antisense, RP_050407_01_G05, Mouse strain C57BL/6J (56 days, male) 2.0

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The Human Protein Atlas

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