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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:83.1 nTPM
HPA:83.1 nTPM
GTEx:125.7 nTPM
FANTOM5:55.3 Scaled Tags Per Million
Pig:13.9 nTPM
Mouse:20.7 nTPM
Allen mouse:1.0 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 83.1
Sample id Sample description nTPM
Amygdala
nTPM: 83.1
2695 Female, age 67, right hemisphere 93.0
2514 Male, age 75, right hemisphere 82.9
2814 Male, age 76, right hemisphere 81.2
1987 Female, age 91, left hemisphere 79.1
2517 Female, age 94, left hemisphere 79.1
Basal amygdala
nTPM: 77.4
2609 Male, age 75, right hemisphere 78.9
2110 Male, age 80, left hemisphere 78.6
2685 Female, age 94, left hemisphere 78.3
1955 Male, age 76, both hemispheres 78.1
2243 Female, age 91, right hemisphere 76.3
2827 Female, age 67, right hemisphere 74.4
Central amygdala
nTPM: 80.0
2826 Female, age 94, left hemisphere 82.4
1905 Male, age 76, both hemispheres 81.4
2515 Male, age 75, right hemisphere 80.8
2239 Male, age 80, left hemisphere 77.6
2701 Female, age 91, right hemisphere 77.6
Corticomedial amygdala
nTPM: 78.0
2829 Male, age 80, left hemisphere 80.7
2428 Male, age 75, right hemisphere 80.1
2429 Female, age 94, left hemisphere 79.3
2240 Male, age 76, both hemispheres 78.1
2242 Female, age 91, right hemisphere 77.2
2535 Female, age 67, right hemisphere 72.6
Lateral amygdala
nTPM: 77.6
1883 Male, age 76, both hemispheres 81.1
2516 Male, age 75, right hemisphere 80.8
2534 Female, age 94, left hemisphere 78.5
2256 Male, age 80, left hemisphere 75.9
2830 Female, age 67, right hemisphere 75.3
2255 Female, age 91, right hemisphere 73.7
Stria terminalis, bed nucleus
nTPM: 79.0
1974 Female, age 91, both hemispheres 79.7
2486 Female, age 94, both hemispheres 79.1
2201 Male, age 74, unknown 78.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 125.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 125.7
Samples: 152

Max nTPM: 402.5
Min nTPM: 56.2
Std nTPM: 50.0
Median nTPM: 114.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 402.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 383.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 295.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 289.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 254.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 241.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 213.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 213.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 198.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 193.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 190.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 184.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 181.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 180.8
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 180.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 177.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 177.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 174.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 169.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 166.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 165.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 161.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 159.8
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 157.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 154.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 153.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 152.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 152.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 148.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 144.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 144.6
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 144.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 143.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 142.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 141.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 140.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 140.5
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 139.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 138.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 138.6
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 137.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 135.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 134.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 133.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 133.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 133.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 131.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 130.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 130.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 129.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 128.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 127.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 127.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 127.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 126.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 126.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 125.8
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 125.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 124.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 123.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 123.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 121.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 119.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 119.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 119.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 118.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 117.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 116.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 116.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 116.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 116.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 116.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 115.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 115.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 114.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 114.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 114.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 114.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 114.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 113.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 112.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 112.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 110.8
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 110.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 109.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 109.2
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 109.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 107.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 106.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 106.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 106.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 106.2
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 105.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 104.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 103.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 103.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 103.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 102.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 102.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 100.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 100.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 100.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 100.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 100.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 100.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 99.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 98.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 98.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 98.1
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 98.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 97.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 97.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 96.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 96.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 96.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 96.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 95.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 95.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 95.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 95.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 94.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 94.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 94.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 94.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 94.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 93.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 91.9
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 90.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 89.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 88.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 87.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 87.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 86.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 86.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 85.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 84.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 83.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 83.6
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 81.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 80.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 80.5
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 80.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 79.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 79.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 78.1
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 77.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 74.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 71.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 70.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 64.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 63.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 56.2
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 55.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 55.3
FF:10151-102I7 76 years, female 55.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 13.9
Pig sample Sample description nTPM
Amygdala
nTPM: 13.9
Samples: 4

Max nTPM: 16.7
Min nTPM: 11.6
Sample A Female 14.8
Sample B Female 16.7
Sample C Male 12.4
Sample D Male 11.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 20.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 20.7
Samples: 4

Max nTPM: 24.3
Min nTPM: 17.1
Sample A Male 18.5
Sample B Male 22.9
Sample C Female 24.3
Sample D Female 17.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 1.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 1.0
76098393 Antisense, RP_060626_01_G06, Mouse strain C57BL/6J (56 days, male) 1.0

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