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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:223.8 nTPM
HPA:223.8 nTPM
GTEx:346.7 nTPM
FANTOM5:195.0 Scaled Tags Per Million

AMYGDALA - HPA Brain RNA-seq
Max nTPM 223.8
Sample id Sample description nTPM
Amygdala
nTPM: 223.8
2814 Male, age 76, right hemisphere 250.3
2695 Female, age 67, right hemisphere 229.2
1987 Female, age 91, left hemisphere 227.2
2517 Female, age 94, left hemisphere 212.8
2514 Male, age 75, right hemisphere 199.3
Basal amygdala
nTPM: 196.8
1955 Male, age 76, both hemispheres 223.2
2110 Male, age 80, left hemisphere 213.1
2609 Male, age 75, right hemisphere 202.7
2827 Female, age 67, right hemisphere 186.5
2243 Female, age 91, right hemisphere 179.9
2685 Female, age 94, left hemisphere 175.3
Central amygdala
nTPM: 213.8
1905 Male, age 76, both hemispheres 237.4
2515 Male, age 75, right hemisphere 219.1
2826 Female, age 94, left hemisphere 215.6
2239 Male, age 80, left hemisphere 200.0
2701 Female, age 91, right hemisphere 197.0
Corticomedial amygdala
nTPM: 181.1
2428 Male, age 75, right hemisphere 195.1
2829 Male, age 80, left hemisphere 189.7
2240 Male, age 76, both hemispheres 182.6
2535 Female, age 67, right hemisphere 178.1
2429 Female, age 94, left hemisphere 175.7
2242 Female, age 91, right hemisphere 165.2
Lateral amygdala
nTPM: 211.2
1883 Male, age 76, both hemispheres 225.3
2830 Female, age 67, right hemisphere 218.2
2516 Male, age 75, right hemisphere 209.8
2534 Female, age 94, left hemisphere 207.5
2255 Female, age 91, right hemisphere 205.7
2256 Male, age 80, left hemisphere 200.8
Stria terminalis, bed nucleus
nTPM: 181.5
2201 Male, age 74, unknown 187.1
1974 Female, age 91, both hemispheres 186.5
2486 Female, age 94, both hemispheres 170.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 346.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 346.7
Samples: 152

Max nTPM: 1749.6
Min nTPM: 174.4
Std nTPM: 159.6
Median nTPM: 313.0
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 1749.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 757.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 713.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 711.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 684.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 628.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 624.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 589.3
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 582.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 581.7
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 580.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 571.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 540.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 535.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 530.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 510.9
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 493.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 475.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 452.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 450.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 449.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 446.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 446.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 421.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 413.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 410.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 410.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 402.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 397.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 396.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 388.8
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 386.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 381.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 381.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 378.7
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 378.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 376.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 376.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 373.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 366.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 363.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 362.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 362.1
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 360.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 360.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 358.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 355.3
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 355.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 353.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 350.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 350.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 349.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 348.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 346.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 344.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 344.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 341.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 337.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 335.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 334.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 334.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 334.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 334.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 332.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 332.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 329.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 329.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 328.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 327.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 325.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 325.7
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 325.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 320.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 316.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 314.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 313.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 312.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 309.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 306.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 306.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 304.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 300.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 299.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 297.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 297.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 296.5
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 296.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 295.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 295.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 293.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 293.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 290.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 289.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 287.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 284.2
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 283.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 283.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 282.8
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 281.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 279.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 278.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 277.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 277.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 275.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 270.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 269.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 268.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 267.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 267.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 265.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 264.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 263.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 263.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 263.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 262.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 260.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 259.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 259.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 257.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 254.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 253.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 251.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 250.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 249.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 246.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 244.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 243.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 243.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 239.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 239.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 238.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 238.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 235.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 235.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 232.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 230.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 230.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 229.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 229.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 227.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 226.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 225.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 223.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 223.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 223.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 221.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 214.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 209.3
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 208.3
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 205.5
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 176.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 174.4
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 195.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 195.0
FF:10151-102I7 76 years, female 195.0

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