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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:253.7 nTPM
HPA:253.7 nTPM
GTEx:438.4 nTPM
FANTOM5:319.6 Scaled Tags Per Million

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 253.7
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 249.1
1981 Female, age 72, midline 311.9
2565 Male, age 75, midline 251.4
2194 Female, age 79, both hemispheres 246.4
2816 Male, age 47, midline 234.2
2048 Male, age 55, midline 201.4
Cervical spinal cord, dorsal horn
nTPM: 253.7
2173 Female, age 72, unknown 294.3
2296 Male, age 66, both hemispheres 277.2
2069 Male, age 47, both hemispheres 273.1
1877 Male, age 55, unknown 239.0
2297 Male, age 75, both hemispheres 221.6
2721 Male, age 90, both hemispheres 217.0
Cervical spinal cord, ventral horn
nTPM: 243.3
2098 Female, age 72, unknown 319.8
2809 Male, age 90, both hemispheres 275.0
2480 Male, age 75, both hemispheres 236.2
2068 Male, age 55, unknown 231.1
2295 Male, age 66, both hemispheres 202.2
2820 Female, age 79, both hemispheres 195.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 438.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 438.4
Samples: 159

Max nTPM: 1015.2
Min nTPM: 184.6
Std nTPM: 129.7
Median nTPM: 408.6
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 1015.2
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 858.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 839.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 776.2
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 753.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 748.7
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 725.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 720.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 717.5
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 683.8
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 676.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 664.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 639.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 636.7
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 624.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 600.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 599.8
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 596.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 594.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 572.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 570.6
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 564.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 561.1
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 558.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 553.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 552.2
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 547.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 538.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 537.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 534.4
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 532.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 526.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 525.6
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 516.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 513.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 507.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 501.2
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 500.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 499.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 499.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 492.2
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 489.6
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 486.9
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 482.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 482.0
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 481.1
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 478.1
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 472.2
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 460.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 456.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 455.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 455.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 452.2
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 449.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 447.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 444.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 442.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 442.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 440.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 438.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 435.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 435.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 434.6
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 434.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 432.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 432.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 428.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 427.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 426.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 424.1
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 422.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 421.2
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 418.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 417.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 417.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 416.8
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 413.3
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 411.5
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 409.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 408.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 406.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 405.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 404.4
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 403.1
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 402.7
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 401.9
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 401.5
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 400.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 399.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 399.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 399.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 399.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 397.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 396.8
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 396.5
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 395.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 394.8
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 392.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 389.9
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 389.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 388.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 387.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 387.8
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 385.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 384.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 380.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 378.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 377.4
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 376.3
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 373.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 369.6
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 368.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 366.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 361.6
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 360.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 359.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 352.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 352.2
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 350.2
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 349.0
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 341.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 336.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 335.1
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 334.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 331.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 331.2
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 330.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 327.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 327.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 326.6
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 325.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 322.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 322.6
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 321.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 320.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 320.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 317.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 310.7
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 310.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 309.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 308.4
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 308.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 305.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 305.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 304.0
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 300.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 299.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 299.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 296.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 294.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 287.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 286.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 285.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 279.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 279.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 271.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 266.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 260.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 184.6
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 319.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 319.6
FF:10181-103D1 60 years, female 385.7
FF:10159-103A6 76 years, female 253.6

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