MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:86.4 nTPM
HPA:86.4 nTPM
GTEx:170.5 nTPM
FANTOM5:164.3 Scaled Tags Per Million
Mouse:396.7 nTPM
Allen mouse:9.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 86.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 81.5
2019 Male, age 18, unknown 85.7
2666 Male, age 74, left hemisphere 85.1
1827 Male, age 72, unknown 82.8
2586 Male, age 75, left hemisphere 82.4
1870 Female, age 42, unknown 81.6
2411 Female, age 72, unknown 81.4
2828 Female, age 72, unknown 81.2
2219 Male, age 76, both hemispheres 79.4
1833 Male, age 53, unknown 78.9
1830 Male, age 51, unknown 77.0
Dorsal raphe nucleus
nTPM: 81.4
2750 Male, age 76, both hemispheres 84.1
2298 Female, age 72, unknown 83.4
2047 Male, age 72, unknown 82.2
1828 Male, age 53, unknown 82.1
2016 Female, age 72, unknown 75.1
Inferior colliculus
nTPM: 77.4
2097 Female, age 72, unknown 79.1
1890 Male, age 53, unknown 78.4
1848 Female, age 42, unknown 77.1
2849 Male, age 72, unknown 75.2
Median raphe nucleus
nTPM: 83.3
2220 Male, age 76, midline 83.3
Pedunculopontine tegmental nucleus
nTPM: 86.4
2334 Male, age 80, both hemispheres 90.4
2338 Male, age 61, both hemispheres 87.9
1921 Female, age 85, both hemispheres 80.9
Periaquaductal grey, anterior
nTPM: 81.5
1947 Male, age 18, unknown 82.0
2502 Female, age 75, unknown 81.5
1795 Male, age 51, unknown 80.9
Periaquaductal grey, dorsal
nTPM: 76.8
2464 Female, age 72, unknown 77.8
1831 Male, age 72, unknown 77.7
1840 Male, age 53, unknown 76.0
2850 Male, age 76, both hemispheres 75.8
Periaquaductal grey, lateral
nTPM: 75.5
2272 Male, age 74, both hemispheres 78.0
2053 Male, age 18, unknown 75.1
2140 Male, age 76, both hemispheres 73.5
Pretectal area
nTPM: 82.9
1817 Female, age 42, unknown 90.5
1816 Male, age 51, unknown 90.2
1944 Female, age 72, unknown 88.5
2007 Male, age 72, unknown 88.4
1815 Male, age 53, unknown 85.3
2667 Female, age 75, unknown 82.5
2224 Female, age 72, unknown 80.0
2407 Male, age 75, both hemispheres 78.2
2825 Male, age 18, unknown 77.3
2273 Male, age 74, both hemispheres 77.1
2316 Male, age 76, right hemisphere 74.4
Red nucleus
nTPM: 81.5
2785 Male, age 18, unknown 85.2
1821 Female, age 72, unknown 84.4
2725 Female, age 75, unknown 83.8
1954 Female, age 42, unknown 83.0
1865 Male, age 51, unknown 82.0
2769 Male, age 72, unknown 81.5
2227 Male, age 72, unknown 80.9
1904 Male, age 53, unknown 80.5
2503 Female, age 72, unknown 80.2
2823 Male, age 76, right hemisphere 80.1
2584 Male, age 75, left hemisphere 79.9
2588 Male, age 74, left hemisphere 76.7
Substantia nigra
nTPM: 86.1
1916 Female, age 42, unknown 100.1
1851 Male, age 51, unknown 91.0
1941 Male, age 53, unknown 89.8
1889 Female, age 72, unknown 86.9
2665 Male, age 74, both hemispheres 86.6
2241 Male, age 72, unknown 82.5
2409 Female, age 72, unknown 82.3
2583 Male, age 75, right hemisphere 82.3
2699 Male, age 18, unknown 82.2
2590 Female, age 75, unknown 77.2
Superior colliculus
nTPM: 80.4
2668 Female, age 75, unknown 86.8
2087 Female, age 72, unknown 84.4
2261 Male, age 18, unknown 81.3
1796 Male, age 53, unknown 80.9
1913 Female, age 42, unknown 80.7
2587 Male, age 74, left hemisphere 78.8
1895 Male, age 76, right hemisphere 78.3
2664 Male, age 75, both hemispheres 78.3
1995 Male, age 72, unknown 77.9
1839 Male, age 51, unknown 76.5
Ventral tegmental area
nTPM: 82.9
1915 Female, age 42, unknown 88.1
2410 Female, age 72, unknown 84.9
2218 Male, age 76, both hemispheres 84.0
2223 Female, age 72, unknown 81.4
1942 Male, age 51, unknown 80.4
2021 Male, age 53, unknown 78.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 170.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 170.5
Samples: 139

Max nTPM: 324.6
Min nTPM: 99.1
Std nTPM: 32.3
Median nTPM: 166.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 324.6
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 281.3
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 272.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 242.2
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 234.5
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 228.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 220.9
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 218.2
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 216.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 215.3
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 214.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 164.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 164.3
FF:10158-103A5 76 years, female 164.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 396.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 396.7
Samples: 4

Max nTPM: 416.0
Min nTPM: 386.4
Sample A Male 397.9
Sample B Male 386.5
Sample C Female 386.4
Sample D Female 416.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 9.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.4
2183 Antisense, RP_040407_02_C04, Mouse strain C57BL/6J (56 days, male) 9.4
2184 Antisense, RP_040407_02_C04, Mouse strain C57BL/6J (56 days, male) 2.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
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