BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: High
Neuronal cells: High
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:38.6 nTPM
HPA:38.6 nTPM
GTEx:44.6 nTPM
FANTOM5:42.9 Scaled Tags Per Million
Pig:34.1 nTPM
Mouse:57.7 nTPM
Allen mouse:5.0 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA001396Antibody CAB004395
Glial cells HighHigh
Neuronal cells LowHigh





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 38.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 33.5
2846 Female, age 79, unknown 36.3
1781 Male, age 74, unknown 35.4
1857 Female, age 85, left hemisphere 34.7
2290 Female, age 72, unknown 34.1
1854 Male, age 80, left hemisphere 33.9
2481 Female, age 94, left hemisphere 33.8
2289 Male, age 61, right hemisphere 31.8
2288 Male, age 75, left hemisphere 27.7
Claustrum
nTPM: 37.3
2645 Female, age 72, unknown 44.5
2284 Female, age 91, both hemispheres 41.0
2568 Male, age 61, both hemispheres 40.1
1956 Male, age 74, unknown 38.6
2196 Female, age 79, unknown 38.2
2198 Male, age 80, both hemispheres 37.2
2292 Female, age 85, both hemispheres 35.6
2392 Female, age 94, both hemispheres 30.8
2491 Male, age 75, both hemispheres 29.7
Globus pallidus, externus
nTPM: 30.7
2395 Male, age 75, both hemispheres 33.6
2646 Male, age 61, right hemisphere 32.1
1996 Male, age 80, right hemisphere 31.6
2772 Female, age 79, unknown 29.9
2567 Female, age 72, unknown 26.1
Globus pallidus, internus
nTPM: 28.2
2483 Female, age 94, right hemisphere 33.2
2287 Male, age 75, right hemisphere 30.1
2037 Male, age 80, right hemisphere 28.8
2566 Female, age 72, unknown 27.9
2778 Female, age 91, both hemispheres 27.2
1818 Male, age 74, unknown 26.7
2111 Female, age 85, right hemisphere 23.6
Nucleus accumbens
nTPM: 32.3
1856 Female, age 91, right hemisphere 35.4
1806 Female, age 85, left hemisphere 33.5
2698 Female, age 72, unknown 33.5
1783 Male, age 74, unknown 33.4
2824 Male, age 61, right hemisphere 33.1
2732 Male, age 80, right hemisphere 31.3
2286 Male, age 75, left hemisphere 28.9
2391 Female, age 94, left hemisphere 28.9
Nucleus basalis of Meynert
nTPM: 33.9
2569 Male, age 61, both hemispheres 35.2
2821 Male, age 75, both hemispheres 34.7
2393 Male, age 80, right hemisphere 34.2
2484 Female, age 94, left hemisphere 31.8
Nucleus of the diagonal band
nTPM: 37.6
2029 Male, age 61, right hemisphere 40.5
1812 Female, age 91, both hemispheres 39.3
2775 Male, age 80, right hemisphere 38.8
2195 Female, age 85, both hemispheres 36.1
1979 Male, age 74, unknown 33.4
Olfactory tubercle
nTPM: 38.6
1998 Female, age 91, both hemispheres 42.9
1846 Male, age 80, right hemisphere 39.1
2856 Male, age 75, right hemisphere 36.8
2487 Female, age 94, left hemisphere 35.8
Putamen
nTPM: 31.9
2482 Female, age 94, left hemisphere 33.8
2647 Male, age 75, left hemisphere 33.2
1937 Female, age 91, right hemisphere 32.7
2466 Female, age 79, unknown 32.6
1838 Male, age 80, right hemisphere 32.3
1829 Male, age 74, unknown 30.8
2489 Female, age 72, unknown 27.8
Septal nuclei
nTPM: 36.0
2031 Female, age 72, unknown 41.2
1960 Male, age 74, unknown 41.1
2629 Female, age 94, right hemisphere 37.0
2009 Female, age 91, both hemispheres 36.6
2059 Female, age 85, both hemispheres 33.4
2394 Male, age 61, left hemisphere 31.4
2199 Male, age 80, right hemisphere 31.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 44.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 39.6
Samples: 246

Max nTPM: 93.8
Min nTPM: 15.9
Std nTPM: 10.1
Median nTPM: 37.9
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 93.8
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 81.4
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 80.2
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 71.4
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 70.3
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 65.5
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 62.1
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 61.9
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 61.9
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 61.5
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 60.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 44.6
Samples: 246

Max nTPM: 98.3
Min nTPM: 17.3
Std nTPM: 10.7
Median nTPM: 44.2
GTEX-13NYS-0011-R6b-SM-5MR3R 60-69 years, male 98.3
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 83.8
GTEX-1F48J-0011-R6a-SM-CJI2F 50-59 years, female 73.9
GTEX-NL4W-0011-R6a-SM-2I3GA 50-59 years, male 73.2
GTEX-132Q8-0011-R6a-SM-5K7YN 60-69 years, male 72.5
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 70.9
GTEX-NPJ8-0011-R6a-SM-2HMKB 40-49 years, male 70.7
GTEX-1EH9U-0011-R6a-SM-CJI2C 60-69 years, male 70.2
GTEX-1GN1U-0011-R6a-SM-CKZNO 50-59 years, female 68.9
GTEX-13QJC-0011-R6a-SM-5S2VI 60-69 years, female 64.3
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 62.8
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Brain - Putamen (basal ganglia)
Average nTPM: 39.9
Samples: 205

Max nTPM: 91.7
Min nTPM: 23.7
Std nTPM: 10.1
Median nTPM: 38.7
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 91.7
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 91.5
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 75.6
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 74.8
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 72.1
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 62.5
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 61.0
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 58.0
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 57.8
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 57.8
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 57.6
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 42.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 35.3
FF:10164-103B2 76 years, female 35.3
Globus pallidus
Scaled Tags Per Million: 19.2
FF:10161-103A8 76 years, female 26.7
FF:10175-103C4 60 years, female 11.8
Nucleus accumbens
Scaled Tags Per Million: 42.9
FF:10037-101F1 23-56 years, mixed 42.9
Putamen
Scaled Tags Per Million: 26.5
FF:10176-103C5 60 years, female 26.5

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 34.1
Pig sample Sample description nTPM
Caudate
nTPM: 34.1
Samples: 4

Max nTPM: 41.3
Min nTPM: 27.5
Sample A Female 27.5
Sample B Female 37.2
Sample C Male 41.3
Sample D Male 30.4
Putamen
nTPM: 34.2
Samples: 4

Max nTPM: 41.7
Min nTPM: 25.4
Sample A Female 25.4
Sample B Female 31.5
Sample C Male 38.0
Sample D Male 41.7
Septum
nTPM: 26.3
Samples: 4

Max nTPM: 28.2
Min nTPM: 21.9
Sample A Female 27.8
Sample B Female 28.2
Sample C Male 27.4
Sample D Male 21.9
Ventral pallidum
nTPM: 30.6
Samples: 4

Max nTPM: 37.4
Min nTPM: 28.0
Sample A Female 28.1
Sample B Female 28.7
Sample C Male 37.4
Sample D Male 28.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 57.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 51.4
Samples: 4

Max nTPM: 55.3
Min nTPM: 46.5
Sample A Male 52.0
Sample B Male 51.6
Sample C Female 46.5
Sample D Female 55.3
Septum
nTPM: 52.5
Samples: 4

Max nTPM: 67.6
Min nTPM: 42.7
Sample A Male 67.6
Sample B Male 50.3
Sample C Female 42.7
Sample D Female 49.3
Ventral forebrain
nTPM: 57.7
Samples: 4

Max nTPM: 60.8
Min nTPM: 51.3
Sample A Male 59.8
Sample B Male 58.7
Sample C Female 60.8
Sample D Female 51.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 5.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 4.1
74511805 Antisense, RP_060220_03_B02, Mouse strain C57BL/6J (56 days, male) 4.2
69672486 Antisense, RP_050428_03_H05, Mouse strain C57BL/6J (56 days, male) 4.0
Pallidum
Expression energy: 5.0
74511805 Antisense, RP_060220_03_B02, Mouse strain C57BL/6J (56 days, male) 5.5
69672486 Antisense, RP_050428_03_H05, Mouse strain C57BL/6J (56 days, male) 4.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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