MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:81.9 nTPM
HPA:81.9 nTPM
GTEx:73.2 nTPM
FANTOM5:172.2 Scaled Tags Per Million
Pig:59.9 nTPM
Mouse:113.8 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 81.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 73.2
2586 Male, age 75, left hemisphere 86.1
2666 Male, age 74, left hemisphere 78.5
2219 Male, age 76, both hemispheres 76.0
2828 Female, age 72, unknown 76.0
1827 Male, age 72, unknown 72.2
1833 Male, age 53, unknown 72.0
1870 Female, age 42, unknown 71.7
2019 Male, age 18, unknown 67.6
2411 Female, age 72, unknown 67.5
1830 Male, age 51, unknown 64.4
Dorsal raphe nucleus
nTPM: 74.1
2047 Male, age 72, unknown 77.0
2298 Female, age 72, unknown 75.3
1828 Male, age 53, unknown 75.2
2016 Female, age 72, unknown 73.2
2750 Male, age 76, both hemispheres 69.9
Inferior colliculus
nTPM: 72.8
2849 Male, age 72, unknown 76.3
2097 Female, age 72, unknown 74.6
1848 Female, age 42, unknown 70.1
1890 Male, age 53, unknown 70.1
Median raphe nucleus
nTPM: 81.9
2220 Male, age 76, midline 81.9
Pedunculopontine tegmental nucleus
nTPM: 67.2
2334 Male, age 80, both hemispheres 71.5
1921 Female, age 85, both hemispheres 70.5
2338 Male, age 61, both hemispheres 59.7
Periaquaductal grey, anterior
nTPM: 71.8
2502 Female, age 75, unknown 74.9
1795 Male, age 51, unknown 72.8
1947 Male, age 18, unknown 67.5
Periaquaductal grey, dorsal
nTPM: 80.6
2850 Male, age 76, both hemispheres 91.8
1840 Male, age 53, unknown 83.3
1831 Male, age 72, unknown 74.0
2464 Female, age 72, unknown 73.2
Periaquaductal grey, lateral
nTPM: 69.5
2053 Male, age 18, unknown 73.9
2140 Male, age 76, both hemispheres 73.2
2272 Male, age 74, both hemispheres 61.3
Pretectal area
nTPM: 78.4
1816 Male, age 51, unknown 98.8
1944 Female, age 72, unknown 95.6
1817 Female, age 42, unknown 89.8
1815 Male, age 53, unknown 88.2
2667 Female, age 75, unknown 78.3
2007 Male, age 72, unknown 78.1
2224 Female, age 72, unknown 74.3
2825 Male, age 18, unknown 71.3
2407 Male, age 75, both hemispheres 67.4
2273 Male, age 74, both hemispheres 60.7
2316 Male, age 76, right hemisphere 60.0
Red nucleus
nTPM: 67.8
1821 Female, age 72, unknown 72.8
2588 Male, age 74, left hemisphere 70.7
2785 Male, age 18, unknown 70.6
2503 Female, age 72, unknown 69.6
2725 Female, age 75, unknown 68.8
1865 Male, age 51, unknown 67.7
1954 Female, age 42, unknown 67.4
2823 Male, age 76, right hemisphere 67.4
2584 Male, age 75, left hemisphere 66.7
1904 Male, age 53, unknown 66.4
2769 Male, age 72, unknown 62.9
2227 Male, age 72, unknown 62.1
Substantia nigra
nTPM: 73.8
2665 Male, age 74, both hemispheres 81.6
1889 Female, age 72, unknown 80.1
2241 Male, age 72, unknown 79.6
2699 Male, age 18, unknown 77.1
1916 Female, age 42, unknown 73.0
1851 Male, age 51, unknown 71.6
2409 Female, age 72, unknown 70.8
2583 Male, age 75, right hemisphere 70.2
1941 Male, age 53, unknown 67.3
2590 Female, age 75, unknown 66.6
Superior colliculus
nTPM: 75.9
2087 Female, age 72, unknown 83.1
1995 Male, age 72, unknown 81.7
2261 Male, age 18, unknown 80.5
2587 Male, age 74, left hemisphere 78.3
2668 Female, age 75, unknown 77.6
1796 Male, age 53, unknown 76.9
2664 Male, age 75, both hemispheres 74.1
1913 Female, age 42, unknown 73.0
1839 Male, age 51, unknown 67.4
1895 Male, age 76, right hemisphere 66.7
Ventral tegmental area
nTPM: 74.2
2218 Male, age 76, both hemispheres 77.7
2410 Female, age 72, unknown 76.9
1942 Male, age 51, unknown 75.2
2223 Female, age 72, unknown 72.4
1915 Female, age 42, unknown 71.6
2021 Male, age 53, unknown 71.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 73.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 73.2
Samples: 139

Max nTPM: 128.2
Min nTPM: 43.0
Std nTPM: 15.8
Median nTPM: 70.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 128.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 122.7
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 118.7
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 115.0
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 111.5
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 109.0
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 105.9
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 100.0
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 100.0
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 99.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 97.5
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 172.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 172.2
FF:10158-103A5 76 years, female 172.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 59.9
Pig sample Sample description nTPM
Midbrain
nTPM: 59.9
Samples: 4

Max nTPM: 74.2
Min nTPM: 50.1
Sample A Female 74.2
Sample B Female 50.1
Sample C Male 62.6
Sample D Male 52.8
Periaqueductal gray
nTPM: 51.9
Samples: 3

Max nTPM: 55.8
Min nTPM: 49.2
Sample B Female 50.7
Sample C Male 55.8
Sample D Male 49.2
Substantia nigra
nTPM: 53.8
Samples: 4

Max nTPM: 61.5
Min nTPM: 45.4
Sample A Female 59.4
Sample B Female 45.4
Sample C Male 61.5
Sample D Male 49.0
Superior colliculi
nTPM: 53.9
Samples: 4

Max nTPM: 58.0
Min nTPM: 49.1
Sample A Female 52.7
Sample B Female 49.1
Sample C Male 58.0
Sample D Male 55.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 113.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 113.9
Samples: 4

Max nTPM: 115.4
Min nTPM: 112.0
Sample A Male 112.0
Sample B Male 115.2
Sample C Female 112.8
Sample D Female 115.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
71378408 Antisense, RP_050510_03_F04, Mouse strain C57BL/6J (56 days, male) 0.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.