MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:37.3 nTPM
HPA:37.3 nTPM
GTEx:49.2 nTPM
FANTOM5:114.0 Scaled Tags Per Million
Pig:50.8 nTPM
Mouse:79.1 nTPM
Allen mouse:3.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 37.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 36.0
2586 Male, age 75, left hemisphere 41.1
1833 Male, age 53, unknown 39.3
2219 Male, age 76, both hemispheres 38.8
1830 Male, age 51, unknown 37.4
2828 Female, age 72, unknown 36.5
1827 Male, age 72, unknown 36.0
2666 Male, age 74, left hemisphere 33.9
2411 Female, age 72, unknown 32.8
1870 Female, age 42, unknown 32.5
2019 Male, age 18, unknown 31.7
Dorsal raphe nucleus
nTPM: 25.9
2016 Female, age 72, unknown 30.5
1828 Male, age 53, unknown 29.6
2750 Male, age 76, both hemispheres 24.9
2047 Male, age 72, unknown 23.3
2298 Female, age 72, unknown 21.0
Inferior colliculus
nTPM: 29.9
2849 Male, age 72, unknown 35.0
1890 Male, age 53, unknown 29.9
1848 Female, age 42, unknown 28.8
2097 Female, age 72, unknown 25.9
Median raphe nucleus
nTPM: 23.8
2220 Male, age 76, midline 23.8
Pedunculopontine tegmental nucleus
nTPM: 29.4
2338 Male, age 61, both hemispheres 30.2
2334 Male, age 80, both hemispheres 30.0
1921 Female, age 85, both hemispheres 28.1
Periaquaductal grey, anterior
nTPM: 30.1
1947 Male, age 18, unknown 30.3
2502 Female, age 75, unknown 30.3
1795 Male, age 51, unknown 29.7
Periaquaductal grey, dorsal
nTPM: 28.2
2850 Male, age 76, both hemispheres 33.1
2464 Female, age 72, unknown 29.3
1831 Male, age 72, unknown 27.5
1840 Male, age 53, unknown 23.1
Periaquaductal grey, lateral
nTPM: 30.0
2272 Male, age 74, both hemispheres 30.8
2140 Male, age 76, both hemispheres 29.8
2053 Male, age 18, unknown 29.5
Pretectal area
nTPM: 30.9
2316 Male, age 76, right hemisphere 33.7
2667 Female, age 75, unknown 33.2
1816 Male, age 51, unknown 32.7
1817 Female, age 42, unknown 32.5
2825 Male, age 18, unknown 32.3
1815 Male, age 53, unknown 32.1
2007 Male, age 72, unknown 30.0
2407 Male, age 75, both hemispheres 30.0
1944 Female, age 72, unknown 28.6
2273 Male, age 74, both hemispheres 28.3
2224 Female, age 72, unknown 26.5
Red nucleus
nTPM: 37.3
1904 Male, age 53, unknown 39.8
2588 Male, age 74, left hemisphere 39.8
2769 Male, age 72, unknown 39.3
2503 Female, age 72, unknown 39.1
2227 Male, age 72, unknown 39.0
1865 Male, age 51, unknown 37.0
2823 Male, age 76, right hemisphere 36.9
1954 Female, age 42, unknown 36.4
1821 Female, age 72, unknown 35.3
2584 Male, age 75, left hemisphere 35.3
2725 Female, age 75, unknown 34.8
2785 Male, age 18, unknown 34.8
Substantia nigra
nTPM: 32.9
2583 Male, age 75, right hemisphere 39.7
2699 Male, age 18, unknown 38.3
2409 Female, age 72, unknown 34.6
2590 Female, age 75, unknown 33.5
1851 Male, age 51, unknown 31.8
2665 Male, age 74, both hemispheres 31.7
1941 Male, age 53, unknown 31.1
1916 Female, age 42, unknown 31.0
2241 Male, age 72, unknown 28.9
1889 Female, age 72, unknown 28.4
Superior colliculus
nTPM: 32.3
1913 Female, age 42, unknown 38.7
1895 Male, age 76, right hemisphere 33.9
1839 Male, age 51, unknown 32.4
2261 Male, age 18, unknown 32.3
2664 Male, age 75, both hemispheres 32.1
1995 Male, age 72, unknown 32.0
1796 Male, age 53, unknown 31.7
2668 Female, age 75, unknown 31.2
2587 Male, age 74, left hemisphere 31.1
2087 Female, age 72, unknown 27.4
Ventral tegmental area
nTPM: 30.6
2223 Female, age 72, unknown 33.8
2410 Female, age 72, unknown 32.6
1915 Female, age 42, unknown 30.9
2218 Male, age 76, both hemispheres 29.7
1942 Male, age 51, unknown 28.8
2021 Male, age 53, unknown 27.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 49.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 49.2
Samples: 139

Max nTPM: 79.2
Min nTPM: 25.7
Std nTPM: 8.1
Median nTPM: 49.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 79.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 68.0
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 66.9
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 66.5
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 65.0
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 63.8
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 63.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 63.1
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 60.8
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 60.5
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 58.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 114.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 114.0
FF:10158-103A5 76 years, female 114.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 50.8
Pig sample Sample description nTPM
Midbrain
nTPM: 50.8
Samples: 4

Max nTPM: 64.1
Min nTPM: 44.6
Sample A Female 64.1
Sample B Female 44.6
Sample C Male 48.3
Sample D Male 46.3
Periaqueductal gray
nTPM: 42.7
Samples: 3

Max nTPM: 44.9
Min nTPM: 39.3
Sample B Female 44.0
Sample C Male 44.9
Sample D Male 39.3
Substantia nigra
nTPM: 45.4
Samples: 4

Max nTPM: 48.9
Min nTPM: 40.0
Sample A Female 47.8
Sample B Female 40.0
Sample C Male 44.9
Sample D Male 48.9
Superior colliculi
nTPM: 49.3
Samples: 4

Max nTPM: 50.9
Min nTPM: 47.7
Sample A Female 50.5
Sample B Female 47.7
Sample C Male 50.9
Sample D Male 48.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 79.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 79.1
Samples: 4

Max nTPM: 79.9
Min nTPM: 77.6
Sample A Male 79.1
Sample B Male 77.6
Sample C Female 79.7
Sample D Female 79.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.8
70429208 Antisense, RP_050614_01_C03, Mouse strain C57BL/6J (56 days, male) 5.4
70919304 Antisense, RP_050713_01_A11, Mouse strain C57BL/6J (56 days, male) 2.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.