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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:33.9 nTPM
HPA:33.9 nTPM
GTEx:68.7 nTPM
FANTOM5:111.0 Scaled Tags Per Million
Pig:89.4 nTPM
Mouse:41.2 nTPM

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max nTPM 33.9
Sample id Sample description nTPM
Amygdala
nTPM: 11.2
1987 Female, age 91, left hemisphere 24.9
2517 Female, age 94, left hemisphere 21.4
2514 Male, age 75, right hemisphere 10.1
2695 Female, age 67, right hemisphere 0.0
2814 Male, age 76, right hemisphere 0.0
Basal amygdala
nTPM: 31.9
2243 Female, age 91, right hemisphere 65.1
2685 Female, age 94, left hemisphere 42.1
2110 Male, age 80, left hemisphere 31.5
2827 Female, age 67, right hemisphere 25.3
2609 Male, age 75, right hemisphere 17.0
1955 Male, age 76, both hemispheres 10.4
Central amygdala
nTPM: 33.9
2826 Female, age 94, left hemisphere 76.7
2239 Male, age 80, left hemisphere 39.8
2701 Female, age 91, right hemisphere 37.9
2515 Male, age 75, right hemisphere 15.1
1905 Male, age 76, both hemispheres 0.0
Corticomedial amygdala
nTPM: 28.0
2242 Female, age 91, right hemisphere 69.0
2829 Male, age 80, left hemisphere 43.2
2429 Female, age 94, left hemisphere 17.3
2535 Female, age 67, right hemisphere 17.0
2428 Male, age 75, right hemisphere 14.0
2240 Male, age 76, both hemispheres 7.3
Lateral amygdala
nTPM: 31.2
2534 Female, age 94, left hemisphere 98.3
2256 Male, age 80, left hemisphere 47.1
2255 Female, age 91, right hemisphere 30.5
2830 Female, age 67, right hemisphere 7.5
1883 Male, age 76, both hemispheres 3.9
2516 Male, age 75, right hemisphere 0.0
Stria terminalis, bed nucleus
nTPM: 24.0
1974 Female, age 91, both hemispheres 30.5
2486 Female, age 94, both hemispheres 23.1
2201 Male, age 74, unknown 18.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 68.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 68.7
Samples: 152

Max nTPM: 288.2
Min nTPM: 4.0
Std nTPM: 45.3
Median nTPM: 57.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 288.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 285.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 233.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 192.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 151.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 150.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 146.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 145.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 133.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 131.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 129.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 129.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 128.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 128.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 128.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 127.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 124.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 123.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 121.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 116.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 114.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 112.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 109.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 106.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 106.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 103.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 103.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 100.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 100.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 98.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 95.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 94.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 93.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 91.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 90.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 90.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 89.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 89.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 88.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 88.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 86.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 85.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 84.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 82.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 81.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 78.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 77.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 77.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 76.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 73.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 73.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 73.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 71.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 69.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 68.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 68.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 68.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 68.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 67.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 67.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 65.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 64.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 64.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 64.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 63.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 62.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 61.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 61.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 61.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 60.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 59.7
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 59.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 59.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 59.0
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 58.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 57.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 57.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 57.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 57.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 56.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 56.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 55.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 55.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 55.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 54.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 53.9
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 53.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 51.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 51.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 51.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 51.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 50.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 50.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 49.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 48.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 48.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 48.1
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 47.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 47.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 46.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 46.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 45.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 45.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 44.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 44.9
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 44.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 44.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 44.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 42.6
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 42.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 41.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 40.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 40.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 38.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 37.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 37.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 37.2
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 36.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 36.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 35.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 35.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 34.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 34.3
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 34.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 33.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 33.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 32.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 31.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 31.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 31.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 29.5
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 28.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 28.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 28.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 27.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 26.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 26.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 25.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 23.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 22.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 22.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 22.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 19.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 19.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 18.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 17.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 16.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 16.1
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 15.3
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 7.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 4.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 4.0
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 111.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 111.0
FF:10151-102I7 76 years, female 111.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 89.4
Pig sample Sample description nTPM
Amygdala
nTPM: 89.4
Samples: 4

Max nTPM: 143.9
Min nTPM: 47.0
Sample A Female 143.9
Sample B Female 47.0
Sample C Male 69.7
Sample D Male 96.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 41.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 41.3
Samples: 4

Max nTPM: 47.1
Min nTPM: 36.7
Sample A Male 47.1
Sample B Male 40.1
Sample C Female 41.1
Sample D Female 36.7

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