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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:77.5 nTPM
HPA:77.5 nTPM
GTEx:99.5 nTPM
FANTOM5:102.5 Scaled Tags Per Million
Pig:40.2 nTPM
Mouse:234.5 nTPM
Allen mouse:6.7 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 77.5
Sample id Sample description nTPM
Amygdala
nTPM: 77.5
2514 Male, age 75, right hemisphere 80.3
2814 Male, age 76, right hemisphere 79.5
2695 Female, age 67, right hemisphere 77.4
1987 Female, age 91, left hemisphere 75.7
2517 Female, age 94, left hemisphere 74.3
Basal amygdala
nTPM: 73.1
1955 Male, age 76, both hemispheres 74.8
2609 Male, age 75, right hemisphere 74.6
2110 Male, age 80, left hemisphere 74.1
2685 Female, age 94, left hemisphere 73.5
2243 Female, age 91, right hemisphere 71.1
2827 Female, age 67, right hemisphere 70.4
Central amygdala
nTPM: 75.7
1905 Male, age 76, both hemispheres 79.0
2826 Female, age 94, left hemisphere 78.1
2515 Male, age 75, right hemisphere 76.3
2239 Male, age 80, left hemisphere 73.4
2701 Female, age 91, right hemisphere 71.5
Corticomedial amygdala
nTPM: 74.2
2428 Male, age 75, right hemisphere 77.6
2429 Female, age 94, left hemisphere 77.2
2240 Male, age 76, both hemispheres 75.2
2829 Male, age 80, left hemisphere 75.0
2242 Female, age 91, right hemisphere 72.1
2535 Female, age 67, right hemisphere 68.5
Lateral amygdala
nTPM: 74.7
2516 Male, age 75, right hemisphere 78.9
1883 Male, age 76, both hemispheres 77.8
2534 Female, age 94, left hemisphere 77.1
2830 Female, age 67, right hemisphere 72.4
2256 Male, age 80, left hemisphere 71.4
2255 Female, age 91, right hemisphere 70.7
Stria terminalis, bed nucleus
nTPM: 75.1
1974 Female, age 91, both hemispheres 78.7
2486 Female, age 94, both hemispheres 73.7
2201 Male, age 74, unknown 72.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 99.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 99.5
Samples: 152

Max nTPM: 313.8
Min nTPM: 59.0
Std nTPM: 30.1
Median nTPM: 92.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 313.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 192.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 189.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 185.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 185.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 184.4
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 164.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 148.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 146.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 140.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 133.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 128.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 127.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 127.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 126.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 125.9
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 124.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 123.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 122.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 120.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 120.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 118.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 117.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 117.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 116.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 114.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 114.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 114.1
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 114.1
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 113.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 112.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 112.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 111.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 110.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 110.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 110.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 109.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 109.8
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 109.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 109.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 108.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 108.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 107.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 106.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 105.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 105.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 104.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 104.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 104.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 104.1
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 104.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 102.8
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 102.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 102.1
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 101.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 101.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 101.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 100.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 100.4
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 100.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 99.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 98.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 98.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 97.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 97.1
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 96.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 95.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 95.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 94.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 94.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 94.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 94.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 93.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 93.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 93.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 92.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 92.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 92.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 92.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 92.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 92.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 91.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 91.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 91.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 91.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 90.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 90.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 89.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 89.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 88.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 88.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 88.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 88.1
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 87.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 87.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 87.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 86.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 86.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 86.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 86.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 86.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 85.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 85.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 84.8
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 83.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 83.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 83.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 82.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 82.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 82.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 82.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 81.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 81.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 81.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 81.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 81.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 80.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 80.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 80.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 80.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 80.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 79.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 79.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 79.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 79.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 78.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 78.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 78.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 78.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 76.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 75.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 75.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 75.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 75.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 75.2
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 74.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 74.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 74.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 74.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 72.9
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 72.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 72.2
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 71.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 71.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 68.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 68.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 66.7
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 66.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 65.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 64.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 61.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 59.0
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 102.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 102.5
FF:10151-102I7 76 years, female 102.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 40.2
Pig sample Sample description nTPM
Amygdala
nTPM: 40.2
Samples: 4

Max nTPM: 52.4
Min nTPM: 26.3
Sample A Female 45.4
Sample B Female 52.4
Sample C Male 36.7
Sample D Male 26.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 234.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 234.5
Samples: 4

Max nTPM: 246.3
Min nTPM: 222.7
Sample A Male 222.7
Sample B Male 246.3
Sample C Female 240.6
Sample D Female 228.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 6.7
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 6.7
75774685 Antisense, RP_060530_01_D10, Mouse strain C57BL/6J (56 days, male) 8.8
68196923 Antisense, RP_041116_01_E11, Mouse strain C57BL/6J (56 days, male) 4.6

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