BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:34.8 nTPM
HPA:34.8 nTPM
GTEx:28.2 nTPM
FANTOM5:32.9 Scaled Tags Per Million

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 34.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 31.4
2481 Female, age 94, left hemisphere 34.6
2288 Male, age 75, left hemisphere 33.1
1781 Male, age 74, unknown 31.8
1857 Female, age 85, left hemisphere 31.6
2290 Female, age 72, unknown 30.5
1854 Male, age 80, left hemisphere 30.2
2846 Female, age 79, unknown 29.8
2289 Male, age 61, right hemisphere 29.3
Claustrum
nTPM: 32.1
1956 Male, age 74, unknown 34.0
2392 Female, age 94, both hemispheres 33.5
2198 Male, age 80, both hemispheres 33.2
2491 Male, age 75, both hemispheres 32.5
2196 Female, age 79, unknown 32.3
2568 Male, age 61, both hemispheres 32.0
2284 Female, age 91, both hemispheres 31.9
2292 Female, age 85, both hemispheres 30.2
2645 Female, age 72, unknown 28.9
Globus pallidus, externus
nTPM: 30.7
2395 Male, age 75, both hemispheres 32.6
2772 Female, age 79, unknown 32.6
1996 Male, age 80, right hemisphere 30.0
2646 Male, age 61, right hemisphere 29.3
2567 Female, age 72, unknown 28.8
Globus pallidus, internus
nTPM: 31.5
2287 Male, age 75, right hemisphere 36.1
2483 Female, age 94, right hemisphere 32.8
2778 Female, age 91, both hemispheres 32.2
1818 Male, age 74, unknown 31.2
2037 Male, age 80, right hemisphere 29.9
2111 Female, age 85, right hemisphere 29.3
2566 Female, age 72, unknown 28.8
Nucleus accumbens
nTPM: 32.0
2391 Female, age 94, left hemisphere 34.9
1856 Female, age 91, right hemisphere 34.4
2286 Male, age 75, left hemisphere 32.5
2698 Female, age 72, unknown 32.0
1783 Male, age 74, unknown 31.4
2824 Male, age 61, right hemisphere 31.2
1806 Female, age 85, left hemisphere 30.5
2732 Male, age 80, right hemisphere 29.3
Nucleus basalis of Meynert
nTPM: 30.4
2821 Male, age 75, both hemispheres 32.5
2484 Female, age 94, left hemisphere 30.8
2393 Male, age 80, right hemisphere 30.1
2569 Male, age 61, both hemispheres 28.4
Nucleus of the diagonal band
nTPM: 34.8
2775 Male, age 80, right hemisphere 37.4
1812 Female, age 91, both hemispheres 36.7
2029 Male, age 61, right hemisphere 34.4
2195 Female, age 85, both hemispheres 34.3
1979 Male, age 74, unknown 31.1
Olfactory tubercle
nTPM: 34.7
1846 Male, age 80, right hemisphere 36.5
1998 Female, age 91, both hemispheres 35.7
2487 Female, age 94, left hemisphere 33.7
2856 Male, age 75, right hemisphere 32.9
Putamen
nTPM: 30.2
2482 Female, age 94, left hemisphere 33.6
1838 Male, age 80, right hemisphere 30.5
2647 Male, age 75, left hemisphere 30.5
1937 Female, age 91, right hemisphere 30.2
2466 Female, age 79, unknown 30.2
1829 Male, age 74, unknown 28.6
2489 Female, age 72, unknown 27.5
Septal nuclei
nTPM: 32.4
2031 Female, age 72, unknown 38.5
1960 Male, age 74, unknown 33.5
2629 Female, age 94, right hemisphere 33.2
2009 Female, age 91, both hemispheres 32.9
2199 Male, age 80, right hemisphere 30.0
2059 Female, age 85, both hemispheres 29.8
2394 Male, age 61, left hemisphere 28.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 28.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 24.0
Samples: 246

Max nTPM: 56.7
Min nTPM: 14.6
Std nTPM: 5.8
Median nTPM: 22.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 56.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 44.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 42.9
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 42.8
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 42.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 39.6
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 39.3
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 38.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 38.5
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 38.5
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 34.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 28.2
Samples: 246

Max nTPM: 63.3
Min nTPM: 16.3
Std nTPM: 6.2
Median nTPM: 27.4
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 63.3
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 52.9
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 48.6
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 46.0
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 44.2
GTEX-1LVA9-0011-R6a-SM-EYYWH 50-59 years, male 41.6
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 41.5
GTEX-1H1ZS-0011-R6b-SM-A9G1F 70-79 years, male 40.6
GTEX-1MA7X-0011-R6a-SM-EYYWR 60-69 years, male 39.7
GTEX-13QJC-0011-R6a-SM-5S2VI 60-69 years, female 39.1
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 38.4
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Brain - Putamen (basal ganglia)
Average nTPM: 25.8
Samples: 205

Max nTPM: 51.8
Min nTPM: 16.4
Std nTPM: 5.7
Median nTPM: 24.8
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 51.8
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 51.3
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 47.8
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 44.4
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 42.8
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 42.0
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 41.0
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 39.4
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 37.3
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 36.7
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 35.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 32.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 30.8
FF:10164-103B2 76 years, female 30.8
Globus pallidus
Scaled Tags Per Million: 24.1
FF:10161-103A8 76 years, female 26.9
FF:10175-103C4 60 years, female 21.3
Nucleus accumbens
Scaled Tags Per Million: 30.6
FF:10037-101F1 23-56 years, mixed 30.6
Putamen
Scaled Tags Per Million: 32.9
FF:10176-103C5 60 years, female 32.9

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The Human Protein Atlas

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