BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:3.7 nTPM
HPA:3.7 nTPM
GTEx:12.0 nTPM
FANTOM5:62.9 Scaled Tags Per Million
Pig:8.8 nTPM

CAUDATE - Antibody stainingi
Antibody HPA042960
Glial cells Medium
Neuronal cells Not detected


BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 3.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 3.2
1854 Male, age 80, left hemisphere 4.0
1857 Female, age 85, left hemisphere 3.8
2289 Male, age 61, right hemisphere 3.4
2288 Male, age 75, left hemisphere 3.2
2290 Female, age 72, unknown 3.1
1781 Male, age 74, unknown 2.7
2481 Female, age 94, left hemisphere 2.7
2846 Female, age 79, unknown 2.4
Claustrum
nTPM: 3.6
2568 Male, age 61, both hemispheres 4.9
2284 Female, age 91, both hemispheres 4.1
2645 Female, age 72, unknown 3.9
2392 Female, age 94, both hemispheres 3.7
2196 Female, age 79, unknown 3.4
2491 Male, age 75, both hemispheres 3.3
2198 Male, age 80, both hemispheres 3.2
2292 Female, age 85, both hemispheres 3.0
1956 Male, age 74, unknown 2.5
Globus pallidus, externus
nTPM: 2.5
2395 Male, age 75, both hemispheres 2.7
2567 Female, age 72, unknown 2.6
2646 Male, age 61, right hemisphere 2.4
2772 Female, age 79, unknown 2.4
1996 Male, age 80, right hemisphere 2.2
Globus pallidus, internus
nTPM: 2.7
1818 Male, age 74, unknown 3.2
2566 Female, age 72, unknown 2.9
2037 Male, age 80, right hemisphere 2.7
2287 Male, age 75, right hemisphere 2.7
2778 Female, age 91, both hemispheres 2.7
2111 Female, age 85, right hemisphere 2.5
2483 Female, age 94, right hemisphere 2.4
Nucleus accumbens
nTPM: 3.6
2824 Male, age 61, right hemisphere 4.9
1856 Female, age 91, right hemisphere 4.2
1783 Male, age 74, unknown 3.8
1806 Female, age 85, left hemisphere 3.4
2732 Male, age 80, right hemisphere 3.3
2286 Male, age 75, left hemisphere 3.2
2698 Female, age 72, unknown 3.0
2391 Female, age 94, left hemisphere 2.9
Nucleus basalis of Meynert
nTPM: 3.1
2393 Male, age 80, right hemisphere 4.1
2484 Female, age 94, left hemisphere 2.9
2821 Male, age 75, both hemispheres 2.9
2569 Male, age 61, both hemispheres 2.6
Nucleus of the diagonal band
nTPM: 3.6
1979 Male, age 74, unknown 4.0
2029 Male, age 61, right hemisphere 4.0
2195 Female, age 85, both hemispheres 3.7
2775 Male, age 80, right hemisphere 3.5
1812 Female, age 91, both hemispheres 2.7
Olfactory tubercle
nTPM: 3.7
1998 Female, age 91, both hemispheres 4.2
2487 Female, age 94, left hemisphere 4.1
2856 Male, age 75, right hemisphere 3.6
1846 Male, age 80, right hemisphere 3.1
Putamen
nTPM: 3.4
1838 Male, age 80, right hemisphere 4.7
1937 Female, age 91, right hemisphere 3.7
1829 Male, age 74, unknown 3.4
2466 Female, age 79, unknown 3.2
2647 Male, age 75, left hemisphere 3.1
2482 Female, age 94, left hemisphere 2.8
2489 Female, age 72, unknown 2.8
Septal nuclei
nTPM: 3.3
2199 Male, age 80, right hemisphere 3.7
1960 Male, age 74, unknown 3.4
2031 Female, age 72, unknown 3.4
2009 Female, age 91, both hemispheres 3.3
2059 Female, age 85, both hemispheres 3.3
2394 Male, age 61, left hemisphere 3.3
2629 Female, age 94, right hemisphere 2.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 12.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 9.5
Samples: 246

Max nTPM: 15.8
Min nTPM: 3.5
Std nTPM: 2.4
Median nTPM: 9.6
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 15.8
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 15.0
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 15.0
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 14.9
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 14.5
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 14.3
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 14.1
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 14.0
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 13.6
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 13.6
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 13.6
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 12.0
Samples: 246

Max nTPM: 26.3
Min nTPM: 3.0
Std nTPM: 3.4
Median nTPM: 11.8
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 26.3
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 20.5
GTEX-13112-0011-R6b-SM-5DUVK 50-59 years, male 20.3
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 20.3
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 19.8
GTEX-1GMRU-0011-R6b-SM-A9G3B 50-59 years, male 19.7
GTEX-12WSE-0011-R6b-SM-5LZV5 20-29 years, male 19.2
GTEX-1F75W-0011-R6a-SM-9QEI5 60-69 years, male 18.9
GTEX-15CHQ-0011-R6b-SM-69LOX 60-69 years, male 18.3
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 18.2
GTEX-1BAJH-0011-R6b-SM-7MXT2 70-79 years, male 18.1
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 9.2
Samples: 205

Max nTPM: 16.9
Min nTPM: 2.6
Std nTPM: 2.4
Median nTPM: 9.2
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 16.9
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 15.7
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 14.9
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 14.7
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 14.6
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 14.4
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 13.8
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 13.5
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 13.2
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 13.0
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 12.9
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 62.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 51.8
FF:10164-103B2 76 years, female 51.8
Globus pallidus
Scaled Tags Per Million: 62.9
FF:10175-103C4 60 years, female 97.0
FF:10161-103A8 76 years, female 28.7
Nucleus accumbens
Scaled Tags Per Million: 37.1
FF:10037-101F1 23-56 years, mixed 37.1
Putamen
Scaled Tags Per Million: 62.8
FF:10176-103C5 60 years, female 62.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 8.8
Pig sample Sample description nTPM
Caudate
nTPM: 8.7
Samples: 4

Max nTPM: 9.5
Min nTPM: 7.8
Sample A Female 7.8
Sample B Female 9.3
Sample C Male 8.1
Sample D Male 9.5
Putamen
nTPM: 8.5
Samples: 4

Max nTPM: 9.4
Min nTPM: 7.9
Sample A Female 7.9
Sample B Female 9.4
Sample C Male 8.0
Sample D Male 8.5
Septum
nTPM: 8.3
Samples: 4

Max nTPM: 10.2
Min nTPM: 7.2
Sample A Female 7.2
Sample B Female 8.5
Sample C Male 10.2
Sample D Male 7.3
Ventral pallidum
nTPM: 8.8
Samples: 4

Max nTPM: 10.8
Min nTPM: 7.9
Sample A Female 8.2
Sample B Female 7.9
Sample C Male 10.8
Sample D Male 8.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.