BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:50.7 nTPM
HPA:50.7 nTPM
GTEx:49.0 nTPM
FANTOM5:69.6 Scaled Tags Per Million
Pig:31.8 nTPM
Mouse:106.7 nTPM
Allen mouse:0.0 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 50.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 46.7
2288 Male, age 75, left hemisphere 49.8
2481 Female, age 94, left hemisphere 49.6
1857 Female, age 85, left hemisphere 48.3
1781 Male, age 74, unknown 47.5
2846 Female, age 79, unknown 45.9
2290 Female, age 72, unknown 45.1
1854 Male, age 80, left hemisphere 44.8
2289 Male, age 61, right hemisphere 42.5
Claustrum
nTPM: 48.2
2491 Male, age 75, both hemispheres 50.7
2392 Female, age 94, both hemispheres 49.5
2198 Male, age 80, both hemispheres 49.2
1956 Male, age 74, unknown 48.9
2196 Female, age 79, unknown 48.9
2568 Male, age 61, both hemispheres 47.7
2284 Female, age 91, both hemispheres 47.6
2292 Female, age 85, both hemispheres 45.7
2645 Female, age 72, unknown 45.6
Globus pallidus, externus
nTPM: 48.3
2772 Female, age 79, unknown 51.7
2395 Male, age 75, both hemispheres 51.5
1996 Male, age 80, right hemisphere 47.6
2567 Female, age 72, unknown 45.5
2646 Male, age 61, right hemisphere 45.4
Globus pallidus, internus
nTPM: 48.8
2287 Male, age 75, right hemisphere 54.2
2483 Female, age 94, right hemisphere 50.7
2778 Female, age 91, both hemispheres 49.6
2037 Male, age 80, right hemisphere 48.6
1818 Male, age 74, unknown 48.4
2566 Female, age 72, unknown 45.7
2111 Female, age 85, right hemisphere 44.5
Nucleus accumbens
nTPM: 48.4
1856 Female, age 91, right hemisphere 51.9
2286 Male, age 75, left hemisphere 50.2
1783 Male, age 74, unknown 49.7
2391 Female, age 94, left hemisphere 49.2
2824 Male, age 61, right hemisphere 47.8
2698 Female, age 72, unknown 47.1
1806 Female, age 85, left hemisphere 46.2
2732 Male, age 80, right hemisphere 44.9
Nucleus basalis of Meynert
nTPM: 46.9
2821 Male, age 75, both hemispheres 49.2
2484 Female, age 94, left hemisphere 47.6
2569 Male, age 61, both hemispheres 46.2
2393 Male, age 80, right hemisphere 44.6
Nucleus of the diagonal band
nTPM: 50.7
1812 Female, age 91, both hemispheres 52.6
2195 Female, age 85, both hemispheres 51.4
2775 Male, age 80, right hemisphere 51.0
2029 Male, age 61, right hemisphere 49.7
1979 Male, age 74, unknown 49.0
Olfactory tubercle
nTPM: 50.2
1846 Male, age 80, right hemisphere 52.4
1998 Female, age 91, both hemispheres 50.6
2487 Female, age 94, left hemisphere 50.1
2856 Male, age 75, right hemisphere 47.5
Putamen
nTPM: 46.6
2482 Female, age 94, left hemisphere 50.7
1937 Female, age 91, right hemisphere 47.1
1829 Male, age 74, unknown 46.9
1838 Male, age 80, right hemisphere 46.7
2647 Male, age 75, left hemisphere 46.6
2466 Female, age 79, unknown 45.8
2489 Female, age 72, unknown 42.0
Septal nuclei
nTPM: 49.1
2031 Female, age 72, unknown 51.7
1960 Male, age 74, unknown 51.3
2629 Female, age 94, right hemisphere 50.5
2009 Female, age 91, both hemispheres 49.5
2394 Male, age 61, left hemisphere 49.2
2199 Male, age 80, right hemisphere 46.2
2059 Female, age 85, both hemispheres 45.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 49.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 44.1
Samples: 246

Max nTPM: 73.3
Min nTPM: 31.7
Std nTPM: 7.2
Median nTPM: 43.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 73.3
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 70.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 68.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 65.6
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 65.2
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 60.5
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 59.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 59.3
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 59.2
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 59.0
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 58.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 49.0
Samples: 246

Max nTPM: 70.4
Min nTPM: 28.9
Std nTPM: 7.9
Median nTPM: 49.1
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 70.4
GTEX-145MH-0011-R6a-SM-5PNZ7 50-59 years, male 65.9
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 65.6
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 65.4
GTEX-11OF3-0011-R6b-SM-57WBG 60-69 years, male 65.3
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 65.1
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 64.7
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 63.7
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 63.3
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 62.9
GTEX-12ZZZ-0011-R6b-SM-5EQ5B 60-69 years, male 61.8
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Brain - Putamen (basal ganglia)
Average nTPM: 43.8
Samples: 205

Max nTPM: 60.3
Min nTPM: 32.1
Std nTPM: 6.3
Median nTPM: 42.9
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 60.3
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 60.3
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 59.2
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 58.8
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 58.4
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 57.6
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 57.0
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 56.8
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 55.9
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 55.8
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 55.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 69.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 54.7
FF:10164-103B2 76 years, female 54.7
Globus pallidus
Scaled Tags Per Million: 42.0
FF:10161-103A8 76 years, female 44.6
FF:10175-103C4 60 years, female 39.4
Nucleus accumbens
Scaled Tags Per Million: 50.5
FF:10037-101F1 23-56 years, mixed 50.5
Putamen
Scaled Tags Per Million: 69.6
FF:10176-103C5 60 years, female 69.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 31.8
Pig sample Sample description nTPM
Caudate
nTPM: 28.7
Samples: 4

Max nTPM: 32.5
Min nTPM: 26.9
Sample A Female 26.9
Sample B Female 28.5
Sample C Male 32.5
Sample D Male 26.9
Putamen
nTPM: 31.8
Samples: 4

Max nTPM: 43.2
Min nTPM: 25.6
Sample A Female 27.6
Sample B Female 25.6
Sample C Male 43.2
Sample D Male 30.9
Septum
nTPM: 28.9
Samples: 4

Max nTPM: 34.0
Min nTPM: 23.8
Sample A Female 30.8
Sample B Female 27.0
Sample C Male 34.0
Sample D Male 23.8
Ventral pallidum
nTPM: 29.3
Samples: 4

Max nTPM: 34.6
Min nTPM: 25.1
Sample A Female 26.6
Sample B Female 30.8
Sample C Male 34.6
Sample D Male 25.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 106.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 106.7
Samples: 4

Max nTPM: 109.4
Min nTPM: 104.8
Sample A Male 106.3
Sample B Male 109.4
Sample C Female 106.4
Sample D Female 104.8
Septum
nTPM: 81.9
Samples: 4

Max nTPM: 84.6
Min nTPM: 78.4
Sample A Male 78.4
Sample B Male 84.6
Sample C Female 80.2
Sample D Female 84.3
Ventral forebrain
nTPM: 102.5
Samples: 4

Max nTPM: 109.4
Min nTPM: 97.3
Sample A Male 99.2
Sample B Male 104.1
Sample C Female 109.4
Sample D Female 97.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
67978685 Antisense, RP_040923_01_E10, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
67978685 Antisense, RP_040923_01_E10, Mouse strain C57BL/6J (56 days, male) 0.0

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