BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:16.7 nTPM
HPA:16.7 nTPM
GTEx:22.5 nTPM
FANTOM5:10.6 Scaled Tags Per Million
Pig:1.2 nTPM
Mouse:0.2 nTPM
Allen mouse:0.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA025064
Glial cells Low
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 16.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 8.1
2288 Male, age 75, left hemisphere 10.3
2846 Female, age 79, unknown 10.1
2481 Female, age 94, left hemisphere 8.2
1781 Male, age 74, unknown 7.8
1857 Female, age 85, left hemisphere 7.8
2289 Male, age 61, right hemisphere 7.2
1854 Male, age 80, left hemisphere 7.1
2290 Female, age 72, unknown 6.5
Claustrum
nTPM: 7.0
2198 Male, age 80, both hemispheres 8.1
2568 Male, age 61, both hemispheres 7.5
2392 Female, age 94, both hemispheres 7.1
2491 Male, age 75, both hemispheres 7.1
2645 Female, age 72, unknown 7.0
1956 Male, age 74, unknown 6.9
2284 Female, age 91, both hemispheres 6.7
2292 Female, age 85, both hemispheres 6.6
2196 Female, age 79, unknown 6.4
Globus pallidus, externus
nTPM: 16.5
1996 Male, age 80, right hemisphere 24.6
2646 Male, age 61, right hemisphere 19.2
2772 Female, age 79, unknown 16.3
2395 Male, age 75, both hemispheres 11.5
2567 Female, age 72, unknown 10.9
Globus pallidus, internus
nTPM: 16.7
2037 Male, age 80, right hemisphere 24.3
1818 Male, age 74, unknown 18.6
2287 Male, age 75, right hemisphere 18.6
2483 Female, age 94, right hemisphere 17.3
2778 Female, age 91, both hemispheres 15.5
2566 Female, age 72, unknown 11.9
2111 Female, age 85, right hemisphere 10.5
Nucleus accumbens
nTPM: 7.1
2286 Male, age 75, left hemisphere 8.5
2732 Male, age 80, right hemisphere 8.3
2391 Female, age 94, left hemisphere 7.9
2698 Female, age 72, unknown 7.4
1806 Female, age 85, left hemisphere 6.7
1856 Female, age 91, right hemisphere 6.4
1783 Male, age 74, unknown 5.9
2824 Male, age 61, right hemisphere 5.9
Nucleus basalis of Meynert
nTPM: 11.9
2569 Male, age 61, both hemispheres 23.0
2484 Female, age 94, left hemisphere 8.6
2821 Male, age 75, both hemispheres 8.0
2393 Male, age 80, right hemisphere 7.8
Nucleus of the diagonal band
nTPM: 7.1
1812 Female, age 91, both hemispheres 9.0
2195 Female, age 85, both hemispheres 6.9
1979 Male, age 74, unknown 6.7
2029 Male, age 61, right hemisphere 6.3
2775 Male, age 80, right hemisphere 6.3
Olfactory tubercle
nTPM: 6.9
2487 Female, age 94, left hemisphere 7.3
1998 Female, age 91, both hemispheres 6.9
2856 Male, age 75, right hemisphere 6.8
1846 Male, age 80, right hemisphere 6.7
Putamen
nTPM: 9.2
2489 Female, age 72, unknown 11.0
2482 Female, age 94, left hemisphere 10.6
2466 Female, age 79, unknown 9.6
2647 Male, age 75, left hemisphere 8.8
1829 Male, age 74, unknown 8.5
1838 Male, age 80, right hemisphere 7.9
1937 Female, age 91, right hemisphere 7.7
Septal nuclei
nTPM: 7.6
2199 Male, age 80, right hemisphere 9.3
2009 Female, age 91, both hemispheres 8.1
2059 Female, age 85, both hemispheres 7.9
2629 Female, age 94, right hemisphere 7.9
2394 Male, age 61, left hemisphere 7.3
2031 Female, age 72, unknown 6.9
1960 Male, age 74, unknown 5.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 22.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 13.0
Samples: 246

Max nTPM: 56.8
Min nTPM: 1.9
Std nTPM: 9.0
Median nTPM: 10.7
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 56.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 53.1
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 44.4
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 39.7
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 37.7
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 36.6
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 36.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 34.7
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 34.4
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 33.6
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 32.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 7.5
Samples: 246

Max nTPM: 89.7
Min nTPM: 0.8
Std nTPM: 8.7
Median nTPM: 5.1
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 89.7
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 54.9
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 49.4
GTEX-13N1W-0011-R6a-SM-5MR43 70-79 years, male 37.3
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 33.7
GTEX-11GSP-0011-R6b-SM-57WBQ 60-69 years, female 33.2
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 33.1
GTEX-QVUS-0011-R6A-SM-3GACX 60-69 years, female 25.4
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 24.2
GTEX-11TTK-0011-R6b-SM-DNZZW 60-69 years, female 24.0
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 23.7
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Brain - Putamen (basal ganglia)
Average nTPM: 22.5
Samples: 205

Max nTPM: 95.9
Min nTPM: 2.9
Std nTPM: 15.4
Median nTPM: 18.8
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 95.9
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 86.1
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 80.0
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 61.5
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 60.3
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 57.8
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 56.8
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 56.4
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 52.4
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 50.9
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 49.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 10.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 0.4
FF:10164-103B2 76 years, female 0.4
Globus pallidus
Scaled Tags Per Million: 10.6
FF:10175-103C4 60 years, female 11.0
FF:10161-103A8 76 years, female 10.2
Nucleus accumbens
Scaled Tags Per Million: 2.3
FF:10037-101F1 23-56 years, mixed 2.3
Putamen
Scaled Tags Per Million: 1.6
FF:10176-103C5 60 years, female 1.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 1.2
Pig sample Sample description nTPM
Caudate
nTPM: 0.8
Samples: 4

Max nTPM: 1.1
Min nTPM: 0.6
Sample A Female 0.7
Sample B Female 0.6
Sample C Male 0.9
Sample D Male 1.1
Putamen
nTPM: 1.2
Samples: 4

Max nTPM: 1.9
Min nTPM: 0.3
Sample A Female 0.3
Sample B Female 0.7
Sample C Male 1.9
Sample D Male 1.8
Septum
nTPM: 0.6
Samples: 4

Max nTPM: 1.1
Min nTPM: 0.2
Sample A Female 0.2
Sample B Female 1.1
Sample C Male 0.9
Sample D Male 0.2
Ventral pallidum
nTPM: 0.9
Samples: 4

Max nTPM: 1.8
Min nTPM: 0.3
Sample A Female 0.8
Sample B Female 1.8
Sample C Male 0.3
Sample D Male 0.8

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 0.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 0.1
Samples: 4

Max nTPM: 0.2
Min nTPM: 0.0
Sample A Male 0.1
Sample B Male 0.0
Sample C Female 0.2
Sample D Female 0.0
Septum
nTPM: 0.2
Samples: 4

Max nTPM: 0.3
Min nTPM: 0.2
Sample A Male 0.2
Sample B Male 0.3
Sample C Female 0.2
Sample D Female 0.2
Ventral forebrain
nTPM: 0.3
Samples: 4

Max nTPM: 0.7
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.3
Sample C Female 0.7
Sample D Female 0.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
69114192 Antisense, RP_050317_01_C05, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.1
69114192 Antisense, RP_050317_01_C05, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

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