BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:3.9 nTPM
HPA:3.9 nTPM
GTEx:4.2 nTPM
FANTOM5:10.1 Scaled Tags Per Million
Pig:0.3 nTPM
Mouse:3.0 nTPM
Allen mouse:0.2 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA061448Antibody CAB000115Antibody CAB003804
Glial cells Not detectedNot detectedNot detected
Neuronal cells Not detectedNot detectedNot detected







BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 3.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 3.6
1857 Female, age 85, left hemisphere 4.5
2288 Male, age 75, left hemisphere 4.0
2846 Female, age 79, unknown 4.0
1854 Male, age 80, left hemisphere 3.7
1781 Male, age 74, unknown 3.6
2290 Female, age 72, unknown 3.6
2289 Male, age 61, right hemisphere 2.7
2481 Female, age 94, left hemisphere 2.6
Claustrum
nTPM: 3.2
2491 Male, age 75, both hemispheres 3.8
2284 Female, age 91, both hemispheres 3.5
2392 Female, age 94, both hemispheres 3.5
2198 Male, age 80, both hemispheres 3.4
2568 Male, age 61, both hemispheres 3.3
2196 Female, age 79, unknown 3.2
1956 Male, age 74, unknown 3.0
2645 Female, age 72, unknown 2.8
2292 Female, age 85, both hemispheres 2.5
Globus pallidus, externus
nTPM: 2.8
2772 Female, age 79, unknown 3.7
2395 Male, age 75, both hemispheres 3.2
1996 Male, age 80, right hemisphere 3.0
2567 Female, age 72, unknown 2.2
2646 Male, age 61, right hemisphere 2.0
Globus pallidus, internus
nTPM: 2.9
2287 Male, age 75, right hemisphere 3.5
2037 Male, age 80, right hemisphere 3.3
1818 Male, age 74, unknown 3.2
2778 Female, age 91, both hemispheres 3.1
2483 Female, age 94, right hemisphere 2.8
2566 Female, age 72, unknown 2.2
2111 Female, age 85, right hemisphere 2.1
Nucleus accumbens
nTPM: 3.8
1856 Female, age 91, right hemisphere 5.1
2824 Male, age 61, right hemisphere 4.1
1783 Male, age 74, unknown 3.8
2698 Female, age 72, unknown 3.8
1806 Female, age 85, left hemisphere 3.7
2286 Male, age 75, left hemisphere 3.6
2391 Female, age 94, left hemisphere 3.2
2732 Male, age 80, right hemisphere 2.7
Nucleus basalis of Meynert
nTPM: 3.0
2821 Male, age 75, both hemispheres 3.6
2393 Male, age 80, right hemisphere 3.5
2484 Female, age 94, left hemisphere 3.0
2569 Male, age 61, both hemispheres 2.1
Nucleus of the diagonal band
nTPM: 3.7
1812 Female, age 91, both hemispheres 4.2
2029 Male, age 61, right hemisphere 4.1
1979 Male, age 74, unknown 3.7
2775 Male, age 80, right hemisphere 3.7
2195 Female, age 85, both hemispheres 3.0
Olfactory tubercle
nTPM: 3.9
2487 Female, age 94, left hemisphere 4.4
1998 Female, age 91, both hemispheres 4.2
1846 Male, age 80, right hemisphere 3.8
2856 Male, age 75, right hemisphere 3.2
Putamen
nTPM: 3.4
1937 Female, age 91, right hemisphere 4.2
2466 Female, age 79, unknown 4.0
1829 Male, age 74, unknown 3.5
1838 Male, age 80, right hemisphere 3.5
2482 Female, age 94, left hemisphere 3.1
2647 Male, age 75, left hemisphere 2.9
2489 Female, age 72, unknown 2.4
Septal nuclei
nTPM: 3.5
2031 Female, age 72, unknown 4.0
2629 Female, age 94, right hemisphere 4.0
2009 Female, age 91, both hemispheres 3.8
1960 Male, age 74, unknown 3.6
2394 Male, age 61, left hemisphere 3.4
2199 Male, age 80, right hemisphere 3.1
2059 Female, age 85, both hemispheres 2.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 4.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 3.9
Samples: 246

Max nTPM: 15.6
Min nTPM: 0.8
Std nTPM: 1.9
Median nTPM: 3.5
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 15.6
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 11.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 9.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 8.4
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 8.2
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 8.0
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 7.8
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 7.7
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 7.7
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 7.6
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 7.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 4.2
Samples: 246

Max nTPM: 8.7
Min nTPM: 0.8
Std nTPM: 1.6
Median nTPM: 4.2
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 8.7
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 8.3
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 8.2
GTEX-1LH75-0011-R6a-SM-EXURS 50-59 years, female 8.1
GTEX-X585-0011-R6A-SM-46MVJ 50-59 years, male 7.5
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 7.2
GTEX-147GR-0011-R6b-SM-5S2RO 60-69 years, male 7.1
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 7.1
GTEX-1OJC4-0011-R6a-SM-EXOIM 50-59 years, female 7.1
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 6.9
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 6.8
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Brain - Putamen (basal ganglia)
Average nTPM: 3.4
Samples: 205

Max nTPM: 9.2
Min nTPM: 0.8
Std nTPM: 1.5
Median nTPM: 3.1
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 9.2
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 7.7
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 7.7
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 7.3
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 7.2
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 6.5
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 6.3
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 6.2
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 6.2
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 6.2
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 6.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 10.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 8.2
FF:10164-103B2 76 years, female 8.2
Globus pallidus
Scaled Tags Per Million: 3.7
FF:10175-103C4 60 years, female 3.9
FF:10161-103A8 76 years, female 3.6
Nucleus accumbens
Scaled Tags Per Million: 8.7
FF:10037-101F1 23-56 years, mixed 8.7
Putamen
Scaled Tags Per Million: 10.1
FF:10176-103C5 60 years, female 10.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 0.3
Pig sample Sample description nTPM
Caudate
nTPM: 0.3
Samples: 4

Max nTPM: 0.4
Min nTPM: 0.2
Sample A Female 0.3
Sample B Female 0.3
Sample C Male 0.2
Sample D Male 0.4
Putamen
nTPM: 0.1
Samples: 4

Max nTPM: 0.2
Min nTPM: 0.0
Sample A Female 0.2
Sample B Female 0.1
Sample C Male 0.1
Sample D Male 0.0
Septum
nTPM: 0.2
Samples: 4

Max nTPM: 0.3
Min nTPM: 0.1
Sample A Female 0.3
Sample B Female 0.2
Sample C Male 0.3
Sample D Male 0.1
Ventral pallidum
nTPM: 0.1
Samples: 4

Max nTPM: 0.2
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.1
Sample C Male 0.2
Sample D Male 0.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 3.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 3.0
Samples: 4

Max nTPM: 3.6
Min nTPM: 2.5
Sample A Male 2.5
Sample B Male 2.5
Sample C Female 3.6
Sample D Female 3.5
Septum
nTPM: 2.5
Samples: 4

Max nTPM: 3.2
Min nTPM: 2.1
Sample A Male 2.1
Sample B Male 2.6
Sample C Female 2.2
Sample D Female 3.2
Ventral forebrain
nTPM: 0.8
Samples: 4

Max nTPM: 1.0
Min nTPM: 0.4
Sample A Male 1.0
Sample B Male 0.9
Sample C Female 0.4
Sample D Female 1.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.2
68301825 Antisense, RP_041130_01_H06, Mouse strain C57BL/6J (56 days, male) 0.2
Pallidum
Expression energy: 0.2
68301825 Antisense, RP_041130_01_H06, Mouse strain C57BL/6J (56 days, male) 0.2

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