BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:1.7 nTPM
HPA:1.7 nTPM
GTEx:1.3 nTPM
FANTOM5:1.6 Scaled Tags Per Million
Pig:0.9 nTPM
Mouse:5.3 nTPM
Allen mouse:0.1 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 1.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 1.4
1857 Female, age 85, left hemisphere 1.7
1781 Male, age 74, unknown 1.6
2290 Female, age 72, unknown 1.6
2289 Male, age 61, right hemisphere 1.5
2846 Female, age 79, unknown 1.4
1854 Male, age 80, left hemisphere 1.3
2481 Female, age 94, left hemisphere 1.2
2288 Male, age 75, left hemisphere 1.1
Claustrum
nTPM: 1.5
2284 Female, age 91, both hemispheres 1.8
2196 Female, age 79, unknown 1.6
2198 Male, age 80, both hemispheres 1.5
2645 Female, age 72, unknown 1.5
2568 Male, age 61, both hemispheres 1.4
1956 Male, age 74, unknown 1.3
2292 Female, age 85, both hemispheres 1.3
2392 Female, age 94, both hemispheres 1.3
2491 Male, age 75, both hemispheres 1.3
Globus pallidus, externus
nTPM: 1.3
2395 Male, age 75, both hemispheres 1.5
1996 Male, age 80, right hemisphere 1.3
2567 Female, age 72, unknown 1.3
2646 Male, age 61, right hemisphere 1.3
2772 Female, age 79, unknown 1.3
Globus pallidus, internus
nTPM: 1.2
2483 Female, age 94, right hemisphere 1.3
2566 Female, age 72, unknown 1.3
1818 Male, age 74, unknown 1.2
2037 Male, age 80, right hemisphere 1.2
2111 Female, age 85, right hemisphere 1.2
2287 Male, age 75, right hemisphere 1.2
2778 Female, age 91, both hemispheres 1.2
Nucleus accumbens
nTPM: 1.3
1806 Female, age 85, left hemisphere 1.6
1856 Female, age 91, right hemisphere 1.5
1783 Male, age 74, unknown 1.3
2391 Female, age 94, left hemisphere 1.3
2698 Female, age 72, unknown 1.3
2732 Male, age 80, right hemisphere 1.3
2824 Male, age 61, right hemisphere 1.3
2286 Male, age 75, left hemisphere 1.1
Nucleus basalis of Meynert
nTPM: 1.5
2821 Male, age 75, both hemispheres 1.9
2393 Male, age 80, right hemisphere 1.4
2484 Female, age 94, left hemisphere 1.3
2569 Male, age 61, both hemispheres 1.3
Nucleus of the diagonal band
nTPM: 1.6
2195 Female, age 85, both hemispheres 1.9
2029 Male, age 61, right hemisphere 1.6
2775 Male, age 80, right hemisphere 1.6
1812 Female, age 91, both hemispheres 1.5
1979 Male, age 74, unknown 1.3
Olfactory tubercle
nTPM: 1.6
1846 Male, age 80, right hemisphere 1.8
2856 Male, age 75, right hemisphere 1.7
1998 Female, age 91, both hemispheres 1.6
2487 Female, age 94, left hemisphere 1.5
Putamen
nTPM: 1.4
1838 Male, age 80, right hemisphere 1.6
1829 Male, age 74, unknown 1.5
2466 Female, age 79, unknown 1.4
2489 Female, age 72, unknown 1.4
2482 Female, age 94, left hemisphere 1.3
1937 Female, age 91, right hemisphere 1.2
2647 Male, age 75, left hemisphere 1.0
Septal nuclei
nTPM: 1.7
2031 Female, age 72, unknown 1.8
2059 Female, age 85, both hemispheres 1.8
2629 Female, age 94, right hemisphere 1.8
1960 Male, age 74, unknown 1.7
2009 Female, age 91, both hemispheres 1.7
2394 Male, age 61, left hemisphere 1.5
2199 Male, age 80, right hemisphere 1.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 1.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 1.3
Samples: 246

Max nTPM: 4.5
Min nTPM: 0.1
Std nTPM: 0.6
Median nTPM: 1.2
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 4.5
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 3.5
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 3.3
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 3.3
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 3.2
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 3.2
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 3.1
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 3.0
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 2.8
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 2.8
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 2.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 0.8
Samples: 246

Max nTPM: 4.0
Min nTPM: 0.1
Std nTPM: 0.4
Median nTPM: 0.8
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 4.0
GTEX-13N1W-0011-R6a-SM-5MR43 70-79 years, male 2.8
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 2.5
GTEX-ZE7O-0011-R6a-SM-57WCI 50-59 years, female 2.2
GTEX-ZF28-0011-R6a-SM-4WKHI 60-69 years, male 2.2
GTEX-132Q8-0011-R6a-SM-5K7YN 60-69 years, male 2.1
GTEX-14PQA-0011-R6b-SM-6AJAM 50-59 years, female 2.1
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 2.0
GTEX-1F48J-0011-R6a-SM-CJI2F 50-59 years, female 1.8
GTEX-15DYW-0011-R6b-SM-6PALA 60-69 years, female 1.6
GTEX-11OF3-0011-R6b-SM-57WBG 60-69 years, male 1.5
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Brain - Putamen (basal ganglia)
Average nTPM: 0.9
Samples: 205

Max nTPM: 4.9
Min nTPM: 0.0
Std nTPM: 0.5
Median nTPM: 0.8
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 4.9
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 2.6
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 2.5
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 2.5
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 2.2
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 2.1
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 2.0
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 2.0
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 2.0
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 1.9
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 1.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 1.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 1.5
FF:10164-103B2 76 years, female 1.5
Globus pallidus
Scaled Tags Per Million: 1.6
FF:10161-103A8 76 years, female 1.6
FF:10175-103C4 60 years, female 1.5
Nucleus accumbens
Scaled Tags Per Million: 1.1
FF:10037-101F1 23-56 years, mixed 1.1
Putamen
Scaled Tags Per Million: 0.4
FF:10176-103C5 60 years, female 0.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 0.9
Pig sample Sample description nTPM
Caudate
nTPM: 0.4
Samples: 4

Max nTPM: 0.5
Min nTPM: 0.3
Sample A Female 0.4
Sample B Female 0.5
Sample C Male 0.3
Sample D Male 0.3
Putamen
nTPM: 0.4
Samples: 4

Max nTPM: 0.5
Min nTPM: 0.3
Sample A Female 0.4
Sample B Female 0.4
Sample C Male 0.5
Sample D Male 0.3
Septum
nTPM: 0.5
Samples: 4

Max nTPM: 0.8
Min nTPM: 0.3
Sample A Female 0.5
Sample B Female 0.8
Sample C Male 0.5
Sample D Male 0.3
Ventral pallidum
nTPM: 0.9
Samples: 4

Max nTPM: 2.6
Min nTPM: 0.3
Sample A Female 0.3
Sample B Female 0.5
Sample C Male 2.6
Sample D Male 0.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 5.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 2.4
Samples: 4

Max nTPM: 3.4
Min nTPM: 1.4
Sample A Male 1.7
Sample B Male 1.4
Sample C Female 3.4
Sample D Female 2.9
Septum
nTPM: 1.0
Samples: 4

Max nTPM: 1.6
Min nTPM: 0.5
Sample A Male 1.2
Sample B Male 0.5
Sample C Female 1.6
Sample D Female 0.7
Ventral forebrain
nTPM: 5.3
Samples: 4

Max nTPM: 7.1
Min nTPM: 3.3
Sample A Male 5.4
Sample B Male 3.3
Sample C Female 5.3
Sample D Female 7.1

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
79632255 Antisense, RP_071204_01_A11, Mouse strain C57BL/6J (56 days, male) 0.1
74581384 Antisense, RP_060117_02_C02, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.1
74581384 Antisense, RP_060117_02_C02, Mouse strain C57BL/6J (56 days, male) 0.1
79632255 Antisense, RP_071204_01_A11, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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