BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:37.5 nTPM
HPA:37.5 nTPM
GTEx:39.1 nTPM
FANTOM5:29.2 Scaled Tags Per Million
Pig:15.0 nTPM
Mouse:52.5 nTPM
Allen mouse:1.9 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA047204
Glial cells Not detected
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 37.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 36.5
2290 Female, age 72, unknown 39.0
1854 Male, age 80, left hemisphere 38.1
1857 Female, age 85, left hemisphere 38.1
1781 Male, age 74, unknown 36.4
2846 Female, age 79, unknown 35.8
2288 Male, age 75, left hemisphere 35.1
2481 Female, age 94, left hemisphere 34.9
2289 Male, age 61, right hemisphere 34.7
Claustrum
nTPM: 34.5
2198 Male, age 80, both hemispheres 36.9
2196 Female, age 79, unknown 36.0
2284 Female, age 91, both hemispheres 35.4
2491 Male, age 75, both hemispheres 35.2
2392 Female, age 94, both hemispheres 34.9
2645 Female, age 72, unknown 34.8
2568 Male, age 61, both hemispheres 33.4
1956 Male, age 74, unknown 33.2
2292 Female, age 85, both hemispheres 30.7
Globus pallidus, externus
nTPM: 30.9
2395 Male, age 75, both hemispheres 31.8
2772 Female, age 79, unknown 31.5
1996 Male, age 80, right hemisphere 31.3
2646 Male, age 61, right hemisphere 30.1
2567 Female, age 72, unknown 29.9
Globus pallidus, internus
nTPM: 31.1
2483 Female, age 94, right hemisphere 34.8
1818 Male, age 74, unknown 32.1
2287 Male, age 75, right hemisphere 31.9
2778 Female, age 91, both hemispheres 30.7
2037 Male, age 80, right hemisphere 30.3
2566 Female, age 72, unknown 30.0
2111 Female, age 85, right hemisphere 27.9
Nucleus accumbens
nTPM: 36.7
1856 Female, age 91, right hemisphere 41.3
1806 Female, age 85, left hemisphere 39.6
2286 Male, age 75, left hemisphere 36.8
1783 Male, age 74, unknown 36.3
2824 Male, age 61, right hemisphere 35.9
2698 Female, age 72, unknown 35.7
2732 Male, age 80, right hemisphere 35.0
2391 Female, age 94, left hemisphere 33.0
Nucleus basalis of Meynert
nTPM: 32.9
2393 Male, age 80, right hemisphere 34.9
2821 Male, age 75, both hemispheres 33.7
2484 Female, age 94, left hemisphere 32.4
2569 Male, age 61, both hemispheres 30.6
Nucleus of the diagonal band
nTPM: 37.5
1812 Female, age 91, both hemispheres 39.0
2775 Male, age 80, right hemisphere 39.0
2195 Female, age 85, both hemispheres 38.2
1979 Male, age 74, unknown 36.8
2029 Male, age 61, right hemisphere 34.3
Olfactory tubercle
nTPM: 36.6
1846 Male, age 80, right hemisphere 38.5
1998 Female, age 91, both hemispheres 37.0
2487 Female, age 94, left hemisphere 36.0
2856 Male, age 75, right hemisphere 35.1
Putamen
nTPM: 34.9
1838 Male, age 80, right hemisphere 37.8
2466 Female, age 79, unknown 37.2
1937 Female, age 91, right hemisphere 36.3
2482 Female, age 94, left hemisphere 33.6
2647 Male, age 75, left hemisphere 33.5
2489 Female, age 72, unknown 33.0
1829 Male, age 74, unknown 32.7
Septal nuclei
nTPM: 37.5
1960 Male, age 74, unknown 39.4
2629 Female, age 94, right hemisphere 39.3
2009 Female, age 91, both hemispheres 39.2
2031 Female, age 72, unknown 39.0
2059 Female, age 85, both hemispheres 36.9
2199 Male, age 80, right hemisphere 34.9
2394 Male, age 61, left hemisphere 33.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 39.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 33.1
Samples: 246

Max nTPM: 68.3
Min nTPM: 19.3
Std nTPM: 8.0
Median nTPM: 31.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 68.3
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 64.5
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 60.5
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 57.9
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 57.0
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 54.8
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 52.9
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 51.9
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 50.3
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 49.7
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 48.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 39.1
Samples: 246

Max nTPM: 136.5
Min nTPM: 18.3
Std nTPM: 12.3
Median nTPM: 37.7
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 136.5
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 116.7
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 110.2
GTEX-13SLW-0011-R6a-SM-5O9BH 70-79 years, male 79.6
GTEX-1GMR8-0011-R6b-SM-CE6RC 50-59 years, female 66.4
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 63.3
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 60.3
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 57.2
GTEX-1I1GS-0011-R6b-SM-CMKHE 60-69 years, male 57.0
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 56.6
GTEX-1HBPM-0011-R6b-SM-ARU73 60-69 years, female 56.6
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Brain - Putamen (basal ganglia)
Average nTPM: 26.8
Samples: 205

Max nTPM: 95.6
Min nTPM: 11.7
Std nTPM: 8.5
Median nTPM: 25.1
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 95.6
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 59.6
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 48.8
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 46.6
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 46.1
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 41.4
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 40.8
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 39.9
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 39.3
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 39.1
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 38.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 29.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 29.2
FF:10164-103B2 76 years, female 29.2
Globus pallidus
Scaled Tags Per Million: 14.0
FF:10175-103C4 60 years, female 17.3
FF:10161-103A8 76 years, female 10.6
Nucleus accumbens
Scaled Tags Per Million: 28.2
FF:10037-101F1 23-56 years, mixed 28.2
Putamen
Scaled Tags Per Million: 27.8
FF:10176-103C5 60 years, female 27.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 15.0
Pig sample Sample description nTPM
Caudate
nTPM: 13.7
Samples: 4

Max nTPM: 14.0
Min nTPM: 13.3
Sample A Female 13.3
Sample B Female 13.4
Sample C Male 14.0
Sample D Male 13.9
Putamen
nTPM: 13.5
Samples: 4

Max nTPM: 16.4
Min nTPM: 11.7
Sample A Female 13.6
Sample B Female 12.2
Sample C Male 16.4
Sample D Male 11.7
Septum
nTPM: 15.0
Samples: 4

Max nTPM: 15.9
Min nTPM: 13.8
Sample A Female 15.7
Sample B Female 14.7
Sample C Male 15.9
Sample D Male 13.8
Ventral pallidum
nTPM: 13.5
Samples: 4

Max nTPM: 14.1
Min nTPM: 12.8
Sample A Female 13.8
Sample B Female 14.1
Sample C Male 13.3
Sample D Male 12.8

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 52.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 34.3
Samples: 4

Max nTPM: 38.2
Min nTPM: 27.5
Sample A Male 37.7
Sample B Male 27.5
Sample C Female 38.2
Sample D Female 33.8
Septum
nTPM: 52.5
Samples: 4

Max nTPM: 55.6
Min nTPM: 51.2
Sample A Male 51.2
Sample B Male 51.7
Sample C Female 55.6
Sample D Female 51.3
Ventral forebrain
nTPM: 37.5
Samples: 4

Max nTPM: 44.0
Min nTPM: 32.8
Sample A Male 32.8
Sample B Male 44.0
Sample C Female 39.7
Sample D Female 33.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.9
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.6
68745456 Antisense, RP_050210_02_A04, Mouse strain C57BL/6J (56 days, male) 0.6
Pallidum
Expression energy: 1.9
68745456 Antisense, RP_050210_02_A04, Mouse strain C57BL/6J (56 days, male) 1.9

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The Human Protein Atlas

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