BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: High
Neuronal cells: High
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:51.6 nTPM
HPA:51.6 nTPM
GTEx:52.8 nTPM
FANTOM5:103.7 Scaled Tags Per Million
Pig:21.9 nTPM
Mouse:42.6 nTPM
Allen mouse:1.5 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA037477Antibody HPA037478
Glial cells LowHigh
Neuronal cells MediumHigh





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 51.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 46.2
2288 Male, age 75, left hemisphere 48.2
2481 Female, age 94, left hemisphere 48.2
2290 Female, age 72, unknown 47.5
2846 Female, age 79, unknown 47.2
2289 Male, age 61, right hemisphere 46.6
1857 Female, age 85, left hemisphere 45.0
1781 Male, age 74, unknown 44.9
1854 Male, age 80, left hemisphere 42.4
Claustrum
nTPM: 43.7
2292 Female, age 85, both hemispheres 50.6
2196 Female, age 79, unknown 48.5
1956 Male, age 74, unknown 47.3
2568 Male, age 61, both hemispheres 42.2
2284 Female, age 91, both hemispheres 42.0
2198 Male, age 80, both hemispheres 41.3
2645 Female, age 72, unknown 41.3
2392 Female, age 94, both hemispheres 40.5
2491 Male, age 75, both hemispheres 39.6
Globus pallidus, externus
nTPM: 50.8
2646 Male, age 61, right hemisphere 58.2
1996 Male, age 80, right hemisphere 55.1
2567 Female, age 72, unknown 48.8
2772 Female, age 79, unknown 46.5
2395 Male, age 75, both hemispheres 45.5
Globus pallidus, internus
nTPM: 51.6
2483 Female, age 94, right hemisphere 55.0
2287 Male, age 75, right hemisphere 53.8
2111 Female, age 85, right hemisphere 51.8
1818 Male, age 74, unknown 51.1
2778 Female, age 91, both hemispheres 50.0
2566 Female, age 72, unknown 49.7
2037 Male, age 80, right hemisphere 49.5
Nucleus accumbens
nTPM: 42.4
2698 Female, age 72, unknown 48.5
2391 Female, age 94, left hemisphere 47.7
2286 Male, age 75, left hemisphere 44.5
1806 Female, age 85, left hemisphere 43.8
2732 Male, age 80, right hemisphere 41.3
1783 Male, age 74, unknown 40.0
1856 Female, age 91, right hemisphere 38.7
2824 Male, age 61, right hemisphere 34.9
Nucleus basalis of Meynert
nTPM: 49.5
2569 Male, age 61, both hemispheres 58.3
2821 Male, age 75, both hemispheres 48.3
2484 Female, age 94, left hemisphere 46.9
2393 Male, age 80, right hemisphere 44.5
Nucleus of the diagonal band
nTPM: 41.3
1979 Male, age 74, unknown 44.3
1812 Female, age 91, both hemispheres 41.7
2195 Female, age 85, both hemispheres 41.6
2775 Male, age 80, right hemisphere 40.5
2029 Male, age 61, right hemisphere 38.5
Olfactory tubercle
nTPM: 40.0
2856 Male, age 75, right hemisphere 42.3
1846 Male, age 80, right hemisphere 41.0
2487 Female, age 94, left hemisphere 38.5
1998 Female, age 91, both hemispheres 38.3
Putamen
nTPM: 46.9
2489 Female, age 72, unknown 53.4
2482 Female, age 94, left hemisphere 51.5
2647 Male, age 75, left hemisphere 48.7
1829 Male, age 74, unknown 46.0
1838 Male, age 80, right hemisphere 44.6
2466 Female, age 79, unknown 42.7
1937 Female, age 91, right hemisphere 41.2
Septal nuclei
nTPM: 41.7
2199 Male, age 80, right hemisphere 45.9
2394 Male, age 61, left hemisphere 45.7
2629 Female, age 94, right hemisphere 43.4
2009 Female, age 91, both hemispheres 40.1
1960 Male, age 74, unknown 40.0
2059 Female, age 85, both hemispheres 39.4
2031 Female, age 72, unknown 37.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 52.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 48.0
Samples: 246

Max nTPM: 83.5
Min nTPM: 24.3
Std nTPM: 10.0
Median nTPM: 46.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 83.5
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 79.2
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 79.2
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 78.9
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 75.4
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 71.3
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 71.0
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 70.4
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 70.1
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 70.0
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 69.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 41.4
Samples: 246

Max nTPM: 72.7
Min nTPM: 25.0
Std nTPM: 8.9
Median nTPM: 39.4
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 72.7
GTEX-11TTK-0011-R6b-SM-DNZZW 60-69 years, female 69.7
GTEX-1H23P-0011-R6b-SM-A9G1H 60-69 years, male 69.3
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 65.9
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 65.4
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 63.8
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 63.6
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 63.4
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 62.3
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 62.1
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 61.3
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Brain - Putamen (basal ganglia)
Average nTPM: 52.8
Samples: 205

Max nTPM: 102.2
Min nTPM: 32.4
Std nTPM: 11.9
Median nTPM: 50.7
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 102.2
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 90.4
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 89.4
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 88.3
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 84.0
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 83.5
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 80.1
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 78.6
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 76.2
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 76.0
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 74.4
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 103.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 71.6
FF:10164-103B2 76 years, female 71.6
Globus pallidus
Scaled Tags Per Million: 103.7
FF:10161-103A8 76 years, female 116.7
FF:10175-103C4 60 years, female 90.7
Nucleus accumbens
Scaled Tags Per Million: 74.2
FF:10037-101F1 23-56 years, mixed 74.2
Putamen
Scaled Tags Per Million: 71.7
FF:10176-103C5 60 years, female 71.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 21.9
Pig sample Sample description nTPM
Caudate
nTPM: 16.4
Samples: 4

Max nTPM: 19.5
Min nTPM: 14.7
Sample A Female 14.7
Sample B Female 16.0
Sample C Male 19.5
Sample D Male 15.4
Putamen
nTPM: 21.9
Samples: 4

Max nTPM: 24.2
Min nTPM: 17.1
Sample A Female 23.3
Sample B Female 17.1
Sample C Male 24.2
Sample D Male 23.1
Septum
nTPM: 17.0
Samples: 4

Max nTPM: 17.9
Min nTPM: 16.1
Sample A Female 17.7
Sample B Female 16.1
Sample C Male 16.4
Sample D Male 17.9
Ventral pallidum
nTPM: 18.3
Samples: 4

Max nTPM: 20.5
Min nTPM: 16.0
Sample A Female 16.0
Sample B Female 18.5
Sample C Male 18.1
Sample D Male 20.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 42.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 42.2
Samples: 4

Max nTPM: 46.9
Min nTPM: 37.3
Sample A Male 42.3
Sample B Male 37.3
Sample C Female 46.9
Sample D Female 42.3
Septum
nTPM: 41.8
Samples: 4

Max nTPM: 45.0
Min nTPM: 40.2
Sample A Male 40.4
Sample B Male 41.7
Sample C Female 45.0
Sample D Female 40.2
Ventral forebrain
nTPM: 42.6
Samples: 4

Max nTPM: 45.0
Min nTPM: 40.7
Sample A Male 43.1
Sample B Male 40.7
Sample C Female 45.0
Sample D Female 41.7

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.5
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.0
68744934 Antisense, RP_050208_01_H10, Mouse strain C57BL/6J (56 days, male) 1.0
Pallidum
Expression energy: 1.5
68744934 Antisense, RP_050208_01_H10, Mouse strain C57BL/6J (56 days, male) 1.5

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