BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:20.2 nTPM
HPA:20.2 nTPM
GTEx:18.6 nTPM
FANTOM5:102.4 Scaled Tags Per Million
Pig:1.2 nTPM
Mouse:3.2 nTPM
Allen mouse:0.0 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 20.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 17.1
1781 Male, age 74, unknown 26.2
2481 Female, age 94, left hemisphere 20.5
1854 Male, age 80, left hemisphere 18.3
2289 Male, age 61, right hemisphere 15.9
2290 Female, age 72, unknown 15.3
1857 Female, age 85, left hemisphere 14.9
2846 Female, age 79, unknown 13.8
2288 Male, age 75, left hemisphere 11.8
Claustrum
nTPM: 12.7
2196 Female, age 79, unknown 14.8
2392 Female, age 94, both hemispheres 13.7
2198 Male, age 80, both hemispheres 13.5
2645 Female, age 72, unknown 12.9
2292 Female, age 85, both hemispheres 12.7
2491 Male, age 75, both hemispheres 12.4
1956 Male, age 74, unknown 12.3
2284 Female, age 91, both hemispheres 11.5
2568 Male, age 61, both hemispheres 10.7
Globus pallidus, externus
nTPM: 20.2
2646 Male, age 61, right hemisphere 23.3
1996 Male, age 80, right hemisphere 23.2
2395 Male, age 75, both hemispheres 19.7
2567 Female, age 72, unknown 18.4
2772 Female, age 79, unknown 16.3
Globus pallidus, internus
nTPM: 19.4
2483 Female, age 94, right hemisphere 30.9
2037 Male, age 80, right hemisphere 22.1
2778 Female, age 91, both hemispheres 18.3
2287 Male, age 75, right hemisphere 17.6
2111 Female, age 85, right hemisphere 16.0
2566 Female, age 72, unknown 15.7
1818 Male, age 74, unknown 15.2
Nucleus accumbens
nTPM: 15.7
2732 Male, age 80, right hemisphere 27.1
1806 Female, age 85, left hemisphere 17.3
2698 Female, age 72, unknown 16.2
2391 Female, age 94, left hemisphere 14.5
1783 Male, age 74, unknown 14.3
2824 Male, age 61, right hemisphere 12.5
1856 Female, age 91, right hemisphere 12.0
2286 Male, age 75, left hemisphere 11.6
Nucleus basalis of Meynert
nTPM: 17.8
2569 Male, age 61, both hemispheres 24.5
2393 Male, age 80, right hemisphere 18.3
2484 Female, age 94, left hemisphere 15.1
2821 Male, age 75, both hemispheres 13.3
Nucleus of the diagonal band
nTPM: 14.5
1812 Female, age 91, both hemispheres 20.3
1979 Male, age 74, unknown 15.9
2029 Male, age 61, right hemisphere 13.0
2775 Male, age 80, right hemisphere 12.2
2195 Female, age 85, both hemispheres 11.0
Olfactory tubercle
nTPM: 13.4
1846 Male, age 80, right hemisphere 16.5
2856 Male, age 75, right hemisphere 13.1
2487 Female, age 94, left hemisphere 12.8
1998 Female, age 91, both hemispheres 11.3
Putamen
nTPM: 14.3
2489 Female, age 72, unknown 17.2
2482 Female, age 94, left hemisphere 16.7
1829 Male, age 74, unknown 14.0
2466 Female, age 79, unknown 13.7
1838 Male, age 80, right hemisphere 13.6
2647 Male, age 75, left hemisphere 12.4
1937 Female, age 91, right hemisphere 12.2
Septal nuclei
nTPM: 17.6
2199 Male, age 80, right hemisphere 24.2
2394 Male, age 61, left hemisphere 20.1
2009 Female, age 91, both hemispheres 17.9
2629 Female, age 94, right hemisphere 17.5
2059 Female, age 85, both hemispheres 15.4
2031 Female, age 72, unknown 14.6
1960 Male, age 74, unknown 13.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 18.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 18.6
Samples: 246

Max nTPM: 179.6
Min nTPM: 1.7
Std nTPM: 22.7
Median nTPM: 12.0
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 179.6
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 135.2
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 133.7
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 117.3
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 97.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 97.5
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 85.3
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 78.8
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 77.2
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 71.2
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 65.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 16.5
Samples: 246

Max nTPM: 254.3
Min nTPM: 1.2
Std nTPM: 23.6
Median nTPM: 9.8
GTEX-13N1W-0011-R6a-SM-5MR43 70-79 years, male 254.3
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 176.7
GTEX-OHPN-0011-R6A-SM-2I5FH 60-69 years, female 103.9
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 86.5
GTEX-1B996-0011-R6b-SM-793AQ 60-69 years, male 70.5
GTEX-13OVJ-0011-R6b-SM-5L3GH 50-59 years, female 62.4
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 62.3
GTEX-WHSE-0011-R6A-SM-3P5ZP 20-29 years, male 59.4
GTEX-11O72-0011-R6a-SM-DNZZQ 40-49 years, male 53.5
GTEX-P44G-0011-R6A-SM-2XCD3 30-39 years, male 53.3
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 53.1
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Brain - Putamen (basal ganglia)
Average nTPM: 15.4
Samples: 205

Max nTPM: 190.3
Min nTPM: 1.6
Std nTPM: 19.5
Median nTPM: 9.0
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 190.3
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 94.6
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 87.6
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 79.8
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 73.4
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 67.1
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 66.2
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 62.0
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 54.7
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 49.8
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 44.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 102.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 40.0
FF:10164-103B2 76 years, female 40.0
Globus pallidus
Scaled Tags Per Million: 102.4
FF:10175-103C4 60 years, female 172.8
FF:10161-103A8 76 years, female 31.9
Nucleus accumbens
Scaled Tags Per Million: 15.2
FF:10037-101F1 23-56 years, mixed 15.2
Putamen
Scaled Tags Per Million: 43.4
FF:10176-103C5 60 years, female 43.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 1.2
Pig sample Sample description nTPM
Caudate
nTPM: 0.8
Samples: 4

Max nTPM: 0.9
Min nTPM: 0.6
Sample A Female 0.9
Sample B Female 0.9
Sample C Male 0.7
Sample D Male 0.6
Putamen
nTPM: 0.7
Samples: 4

Max nTPM: 0.8
Min nTPM: 0.6
Sample A Female 0.6
Sample B Female 0.7
Sample C Male 0.8
Sample D Male 0.6
Septum
nTPM: 1.2
Samples: 4

Max nTPM: 1.9
Min nTPM: 0.8
Sample A Female 1.9
Sample B Female 0.8
Sample C Male 1.3
Sample D Male 0.8
Ventral pallidum
nTPM: 0.7
Samples: 4

Max nTPM: 1.4
Min nTPM: 0.4
Sample A Female 0.4
Sample B Female 1.4
Sample C Male 0.5
Sample D Male 0.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 3.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 2.3
Samples: 4

Max nTPM: 2.6
Min nTPM: 1.7
Sample A Male 2.6
Sample B Male 1.7
Sample C Female 2.6
Sample D Female 2.3
Septum
nTPM: 3.2
Samples: 4

Max nTPM: 3.9
Min nTPM: 2.7
Sample A Male 3.9
Sample B Male 2.7
Sample C Female 2.8
Sample D Female 3.2
Ventral forebrain
nTPM: 2.5
Samples: 4

Max nTPM: 4.4
Min nTPM: 1.0
Sample A Male 1.0
Sample B Male 3.2
Sample C Female 4.4
Sample D Female 1.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
77454995 Antisense, RP_070129_01_F02, Mouse strain C57BL/6J (56 days, male) 0.0
77280421 Antisense, RP_070116_01_E03, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
77454995 Antisense, RP_070129_01_F02, Mouse strain C57BL/6J (56 days, male) 0.0
77280421 Antisense, RP_070116_01_E03, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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