MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:27.2 nTPM
HPA:27.2 nTPM
GTEx:23.1 nTPM
FANTOM5:154.3 Scaled Tags Per Million
Mouse:46.2 nTPM
Allen mouse:5.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 27.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 23.2
2411 Female, age 72, unknown 28.4
1870 Female, age 42, unknown 27.7
2019 Male, age 18, unknown 26.5
2828 Female, age 72, unknown 26.3
1830 Male, age 51, unknown 25.9
1833 Male, age 53, unknown 24.0
2586 Male, age 75, left hemisphere 20.2
1827 Male, age 72, unknown 19.2
2219 Male, age 76, both hemispheres 17.4
2666 Male, age 74, left hemisphere 16.3
Dorsal raphe nucleus
nTPM: 24.4
2750 Male, age 76, both hemispheres 28.5
2298 Female, age 72, unknown 25.7
2016 Female, age 72, unknown 23.8
2047 Male, age 72, unknown 22.3
1828 Male, age 53, unknown 21.7
Inferior colliculus
nTPM: 20.7
2097 Female, age 72, unknown 25.1
1890 Male, age 53, unknown 21.0
1848 Female, age 42, unknown 20.8
2849 Male, age 72, unknown 16.0
Median raphe nucleus
nTPM: 26.2
2220 Male, age 76, midline 26.2
Pedunculopontine tegmental nucleus
nTPM: 22.0
2334 Male, age 80, both hemispheres 24.4
1921 Female, age 85, both hemispheres 21.0
2338 Male, age 61, both hemispheres 20.5
Periaquaductal grey, anterior
nTPM: 25.1
2502 Female, age 75, unknown 27.6
1947 Male, age 18, unknown 24.0
1795 Male, age 51, unknown 23.6
Periaquaductal grey, dorsal
nTPM: 20.9
2464 Female, age 72, unknown 22.8
2850 Male, age 76, both hemispheres 22.4
1840 Male, age 53, unknown 19.9
1831 Male, age 72, unknown 18.5
Periaquaductal grey, lateral
nTPM: 26.0
2272 Male, age 74, both hemispheres 31.4
2140 Male, age 76, both hemispheres 25.1
2053 Male, age 18, unknown 21.5
Pretectal area
nTPM: 23.9
2273 Male, age 74, both hemispheres 35.9
2316 Male, age 76, right hemisphere 26.7
2224 Female, age 72, unknown 25.6
2007 Male, age 72, unknown 23.5
2667 Female, age 75, unknown 23.5
1815 Male, age 53, unknown 22.7
1817 Female, age 42, unknown 22.7
1944 Female, age 72, unknown 21.5
1816 Male, age 51, unknown 20.9
2825 Male, age 18, unknown 20.8
2407 Male, age 75, both hemispheres 19.4
Red nucleus
nTPM: 27.2
2503 Female, age 72, unknown 33.1
2785 Male, age 18, unknown 31.0
2227 Male, age 72, unknown 30.8
1904 Male, age 53, unknown 30.2
2769 Male, age 72, unknown 29.5
1954 Female, age 42, unknown 28.6
1865 Male, age 51, unknown 28.2
1821 Female, age 72, unknown 27.9
2823 Male, age 76, right hemisphere 24.9
2725 Female, age 75, unknown 22.5
2588 Male, age 74, left hemisphere 20.2
2584 Male, age 75, left hemisphere 19.3
Substantia nigra
nTPM: 21.2
2241 Male, age 72, unknown 24.7
2583 Male, age 75, right hemisphere 23.4
1851 Male, age 51, unknown 22.8
1916 Female, age 42, unknown 22.7
2409 Female, age 72, unknown 22.5
1889 Female, age 72, unknown 22.1
2590 Female, age 75, unknown 20.6
2699 Male, age 18, unknown 20.5
1941 Male, age 53, unknown 18.9
2665 Male, age 74, both hemispheres 14.1
Superior colliculus
nTPM: 23.2
1913 Female, age 42, unknown 30.0
1995 Male, age 72, unknown 28.5
1796 Male, age 53, unknown 26.3
2668 Female, age 75, unknown 25.2
2261 Male, age 18, unknown 24.4
2587 Male, age 74, left hemisphere 22.2
1839 Male, age 51, unknown 22.1
2087 Female, age 72, unknown 19.1
1895 Male, age 76, right hemisphere 18.5
2664 Male, age 75, both hemispheres 15.8
Ventral tegmental area
nTPM: 24.2
2410 Female, age 72, unknown 26.1
2223 Female, age 72, unknown 25.4
2218 Male, age 76, both hemispheres 24.4
2021 Male, age 53, unknown 23.3
1942 Male, age 51, unknown 23.2
1915 Female, age 42, unknown 23.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 23.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 23.1
Samples: 139

Max nTPM: 42.0
Min nTPM: 10.7
Std nTPM: 6.2
Median nTPM: 21.6
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 42.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 40.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 40.2
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 40.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 38.7
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 38.3
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 35.9
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 35.7
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 35.5
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 33.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 33.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 154.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 154.3
FF:10158-103A5 76 years, female 154.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 46.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 46.3
Samples: 4

Max nTPM: 49.6
Min nTPM: 44.4
Sample A Male 44.4
Sample B Male 46.0
Sample C Female 45.0
Sample D Female 49.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.4
69407570 Antisense, RP_050414_01_H08, Mouse strain C57BL/6J (56 days, male) 5.4

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