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CD63
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BRAIN PONS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Pons
PONS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

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No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
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Consensus:544.3 nTPM
HPA:544.3 nTPM
FANTOM5:166.7 Scaled Tags Per Million
Pig:106.7 nTPM
Allen mouse:1.4 Expression energy

PONS - HPA Brain RNA-seq
Max nTPM 544.3
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 503.4
2090 Male, age 80, both hemispheres 517.2
2188 Female, age 91, both hemispheres 507.4
2301 Female, age 85, both hemispheres 497.5
1984 Male, age 76, both hemispheres 491.7
Dorsal cochlear nucleus
nTPM: 517.3
2370 Male, age 61, both hemispheres 525.9
2378 Male, age 80, both hemispheres 520.8
2802 Male, age 74, right hemisphere 515.6
2187 Female, age 91, both hemispheres 515.3
2058 Male, age 76, both hemispheres 508.9
Dorsal tegmental nucleus
nTPM: 531.1
2358 Male, age 61, both hemispheres 584.7
2083 Male, age 80, both hemispheres 528.4
2326 Male, age 74, both hemispheres 509.4
1936 Male, age 76, left hemisphere 502.1
Dorsolateral tegmental area
nTPM: 540.2
2337 Male, age 61, both hemispheres 619.3
2360 Male, age 74, both hemispheres 529.9
2654 Male, age 80, both hemispheres 529.2
2751 Female, age 85, both hemispheres 517.1
2141 Male, age 76, both hemispheres 505.5
Kolliker-Fuse nucleus
nTPM: 520.9
2315 Male, age 76, right hemisphere 538.5
2163 Male, age 80, both hemispheres 517.2
2793 Female, age 91, left hemisphere 506.9
Lateral lemniscal nuclei
nTPM: 493.9
2746 Female, age 85, left hemisphere 514.3
2169 Male, age 76, both hemispheres 493.3
2453 Male, age 74, right hemisphere 488.9
2036 Male, age 80, both hemispheres 486.7
2320 Female, age 91, left hemisphere 486.2
Lateral parabrachial nucleus
nTPM: 532.8
2792 Male, age 76, both hemispheres 545.7
2790 Male, age 61, both hemispheres 543.7
2013 Male, age 80, both hemispheres 526.0
2139 Female, age 85, right hemisphere 515.6
Lateral vestibular nucleus
nTPM: 508.2
2311 Male, age 80, both hemispheres 512.3
2184 Male, age 76, both hemispheres 504.2
Locus coeruleus
nTPM: 529.7
2123 Female, age 91, both hemispheres 556.9
1980 Male, age 76, both hemispheres 544.5
2014 Male, age 55, unknown 536.1
2788 Male, age 74, unknown 534.3
2317 Female, age 72, unknown 523.8
2162 Male, age 80, both hemispheres 507.2
2720 Male, age 74, both hemispheres 505.3
Medial olivary nucleus
nTPM: 544.3
1943 Male, age 61, both hemispheres 568.3
2851 Male, age 80, both hemispheres 553.5
1962 Male, age 76, both hemispheres 528.4
2138 Female, age 91, both hemispheres 527.2
Medial parabrachial nucleus
nTPM: 519.4
2156 Male, age 61, both hemispheres 532.7
2170 Female, age 91, both hemispheres 524.7
2854 Male, age 80, both hemispheres 519.9
2786 Male, age 76, both hemispheres 515.0
2463 Female, age 85, right hemisphere 504.7
Medial periolivary nuclei
nTPM: 503.9
2791 Male, age 74, right hemisphere 526.9
2081 Male, age 80, both hemispheres 524.2
2063 Male, age 76, both hemispheres 495.4
2171 Female, age 85, both hemispheres 486.5
2458 Female, age 91, both hemispheres 486.4
Motor facial nucleus
nTPM: 501.9
2365 Male, age 74, right hemisphere 519.7
2126 Male, age 61, both hemispheres 510.0
2795 Female, age 91, both hemispheres 503.7
2062 Male, age 76, both hemispheres 499.5
2697 Female, age 85, both hemispheres 498.8
2327 Male, age 80, both hemispheres 479.6
Motor trigeminal nucleus
nTPM: 503.6
2335 Male, age 61, both hemispheres 529.6
2309 Male, age 76, both hemispheres 501.1
2079 Male, age 80, both hemispheres 499.6
2560 Male, age 74, both hemispheres 497.9
2321 Female, age 91, both hemispheres 489.8
Nuclei of the trapezoid body
nTPM: 491.5
1983 Male, age 76, both hemispheres 506.6
2166 Male, age 80, both hemispheres 495.4
2159 Male, age 61, both hemispheres 487.8
2368 Female, age 91, both hemispheres 484.0
2735 Female, age 85, both hemispheres 483.9
Paramedian reticular nucleus
nTPM: 514.9
2052 Male, age 76, both hemispheres 521.3
2313 Male, age 61, both hemispheres 517.8
2057 Male, age 80, both hemispheres 515.2
2050 Female, age 85, both hemispheres 505.3
Pontine nuclei
nTPM: 502.7
2115 Male, age 80, left hemisphere 527.5
2109 Female, age 72, unknown 504.8
1863 Male, age 55, unknown 501.6
2727 Male, age 61, right hemisphere 501.6
2454 Male, age 74, left hemisphere 498.8
2319 Female, age 91, both hemispheres 498.3
2787 Female, age 85, both hemispheres 497.6
1968 Male, age 76, left hemisphere 491.6
Pontine raphe nucleus
nTPM: 504.1
2853 Male, age 76, midline 517.0
2122 Female, age 85, midline 491.2
Posteroventral cochlear nucleus
nTPM: 518.8
2341 Male, age 80, both hemispheres 533.3
2371 Male, age 61, both hemispheres 529.2
2135 Female, age 91, both hemispheres 517.4
2070 Male, age 76, both hemispheres 513.7
2752 Female, age 85, both hemispheres 500.2
Principal sensory trigeminal nucleus
nTPM: 499.0
2324 Male, age 76, both hemispheres 505.1
2158 Male, age 61, both hemispheres 502.8
2367 Female, age 91, left hemisphere 498.7
2008 Male, age 80, left hemisphere 489.5
Reticular pontine nucleus, caudal
nTPM: 495.0
2092 Male, age 76, both hemispheres 508.6
2559 Male, age 74, both hemispheres 504.7
2457 Female, age 91, both hemispheres 484.3
2332 Male, age 80, right hemisphere 482.4
Reticular pontine nucleus, oral
nTPM: 510.1
1939 Male, age 80, both hemispheres 534.8
2167 Male, age 76, both hemispheres 513.8
2361 Male, age 74, both hemispheres 507.5
2012 Female, age 85, both hemispheres 501.7
2366 Female, age 91, both hemispheres 492.7
Reticulotegmental nucleus
nTPM: 501.5
2333 Male, age 80, both hemispheres 508.7
2322 Female, age 91, both hemispheres 505.8
2325 Male, age 76, both hemispheres 498.9
2452 Male, age 74, both hemispheres 492.4
Spinal trigeminal nucleus, oral
nTPM: 503.7
2164 Male, age 80, both hemispheres 514.4
1978 Male, age 76, both hemispheres 498.9
2737 Female, age 85, both hemispheres 497.8
Subcoeruleus area
nTPM: 510.4
2369 Female, age 85, left hemisphere 524.4
2323 Female, age 91, left hemisphere 521.3
1958 Male, age 80, both hemispheres 510.6
2451 Male, age 74, both hemispheres 502.0
2089 Male, age 76, left hemisphere 493.8
Superior olive
nTPM: 502.3
2364 Male, age 74, right hemisphere 524.6
2020 Male, age 76, both hemispheres 502.2
2561 Female, age 91, both hemispheres 497.1
1875 Female, age 85, both hemispheres 496.2
2329 Male, age 80, right hemisphere 491.3
Superior vestibular nucleus
nTPM: 533.0
2383 Male, age 74, both hemispheres 557.7
2015 Male, age 80, both hemispheres 523.7
2061 Male, age 76, both hemispheres 517.6
Ventral periolivary nuclei
nTPM: 495.8
2023 Male, age 76, both hemispheres 513.3
2794 Female, age 91, left hemisphere 496.3
2165 Male, age 80, both hemispheres 494.4
2130 Female, age 85, both hemispheres 479.4
Ventrolateral tegmental area, A5 NE cell group
nTPM: 514.3
2359 Male, age 61, both hemispheres 563.0
2840 Female, age 85, both hemispheres 526.1
2161 Male, age 80, both hemispheres 511.6
1959 Male, age 76, both hemispheres 500.7
2449 Male, age 74, both hemispheres 494.1
2456 Female, age 91, both hemispheres 490.4

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

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Max Scaled Tags Per Million 166.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 166.7
FF:10165-103B3 76 years, female 197.8
FF:10182-103D2 60 years, female 135.5
Pons
Scaled Tags Per Million: 90.5
FF:10033-101E6 18-54 years, mixed 90.5

PONS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
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Average nTPM 106.7
Pig sample Sample description nTPM
Pons
nTPM: 106.7
Samples: 4

Max nTPM: 126.2
Min nTPM: 86.4
Sample A Female 94.6
Sample B Female 86.4
Sample C Male 119.6
Sample D Male 126.2

PONS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

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Max Expression energy 1.4
Allen experiment id Experiment description Expression energy
Pons
Expression energy: 1.4
69540611 Antisense, RP_050426_02_B02, Mouse strain C57BL/6J (56 days, male) 1.8
73992715 Antisense, RP_051214_01_E07, Mouse strain C57BL/6J (56 days, male) 1.1

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