MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:32.0 nTPM
HPA:32.0 nTPM
GTEx:46.0 nTPM
FANTOM5:27.6 Scaled Tags Per Million
Pig:12.4 nTPM
Mouse:20.3 nTPM
Allen mouse:2.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 32.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 26.7
2666 Male, age 74, left hemisphere 33.4
2828 Female, age 72, unknown 31.7
1827 Male, age 72, unknown 29.1
2219 Male, age 76, both hemispheres 28.7
2586 Male, age 75, left hemisphere 28.4
1870 Female, age 42, unknown 24.6
1830 Male, age 51, unknown 23.6
1833 Male, age 53, unknown 23.4
2411 Female, age 72, unknown 23.0
2019 Male, age 18, unknown 20.9
Dorsal raphe nucleus
nTPM: 24.5
2016 Female, age 72, unknown 25.3
2298 Female, age 72, unknown 24.5
2047 Male, age 72, unknown 24.3
1828 Male, age 53, unknown 24.2
2750 Male, age 76, both hemispheres 24.2
Inferior colliculus
nTPM: 24.3
2849 Male, age 72, unknown 25.2
1890 Male, age 53, unknown 25.0
1848 Female, age 42, unknown 24.0
2097 Female, age 72, unknown 23.0
Median raphe nucleus
nTPM: 24.8
2220 Male, age 76, midline 24.8
Pedunculopontine tegmental nucleus
nTPM: 23.9
1921 Female, age 85, both hemispheres 25.3
2334 Male, age 80, both hemispheres 24.5
2338 Male, age 61, both hemispheres 21.9
Periaquaductal grey, anterior
nTPM: 27.9
1795 Male, age 51, unknown 30.7
1947 Male, age 18, unknown 26.9
2502 Female, age 75, unknown 26.1
Periaquaductal grey, dorsal
nTPM: 28.0
2850 Male, age 76, both hemispheres 30.9
1831 Male, age 72, unknown 30.1
1840 Male, age 53, unknown 27.2
2464 Female, age 72, unknown 23.7
Periaquaductal grey, lateral
nTPM: 28.3
2053 Male, age 18, unknown 30.8
2140 Male, age 76, both hemispheres 29.8
2272 Male, age 74, both hemispheres 24.2
Pretectal area
nTPM: 24.9
2825 Male, age 18, unknown 27.2
1944 Female, age 72, unknown 26.6
2316 Male, age 76, right hemisphere 26.3
1816 Male, age 51, unknown 25.7
1815 Male, age 53, unknown 24.9
2407 Male, age 75, both hemispheres 24.7
2224 Female, age 72, unknown 24.4
2667 Female, age 75, unknown 24.4
2007 Male, age 72, unknown 24.0
1817 Female, age 42, unknown 23.1
2273 Male, age 74, both hemispheres 22.8
Red nucleus
nTPM: 23.2
2725 Female, age 75, unknown 27.8
2584 Male, age 75, left hemisphere 26.4
2588 Male, age 74, left hemisphere 24.0
2823 Male, age 76, right hemisphere 23.6
2503 Female, age 72, unknown 23.2
2769 Male, age 72, unknown 22.6
2227 Male, age 72, unknown 22.5
1821 Female, age 72, unknown 22.3
1865 Male, age 51, unknown 22.2
2785 Male, age 18, unknown 22.0
1954 Female, age 42, unknown 21.1
1904 Male, age 53, unknown 21.0
Substantia nigra
nTPM: 32.0
2699 Male, age 18, unknown 38.5
1941 Male, age 53, unknown 36.1
2665 Male, age 74, both hemispheres 36.1
1851 Male, age 51, unknown 33.4
1916 Female, age 42, unknown 32.7
2409 Female, age 72, unknown 31.3
2590 Female, age 75, unknown 30.5
2583 Male, age 75, right hemisphere 30.4
2241 Male, age 72, unknown 26.3
1889 Female, age 72, unknown 24.5
Superior colliculus
nTPM: 26.0
1796 Male, age 53, unknown 30.8
2261 Male, age 18, unknown 27.7
2664 Male, age 75, both hemispheres 27.0
1995 Male, age 72, unknown 26.0
1913 Female, age 42, unknown 25.8
2587 Male, age 74, left hemisphere 25.7
1839 Male, age 51, unknown 24.8
2087 Female, age 72, unknown 24.8
1895 Male, age 76, right hemisphere 23.8
2668 Female, age 75, unknown 23.2
Ventral tegmental area
nTPM: 27.2
1915 Female, age 42, unknown 31.3
1942 Male, age 51, unknown 27.7
2218 Male, age 76, both hemispheres 27.0
2021 Male, age 53, unknown 26.7
2223 Female, age 72, unknown 26.2
2410 Female, age 72, unknown 24.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 46.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 46.0
Samples: 139

Max nTPM: 182.9
Min nTPM: 8.7
Std nTPM: 28.6
Median nTPM: 39.4
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 182.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 154.7
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 137.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 137.2
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 115.4
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 106.5
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 97.3
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 96.2
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 91.9
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 89.3
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 89.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 27.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 27.6
FF:10158-103A5 76 years, female 27.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 12.4
Pig sample Sample description nTPM
Midbrain
nTPM: 9.6
Samples: 4

Max nTPM: 13.5
Min nTPM: 4.9
Sample A Female 4.9
Sample B Female 10.0
Sample C Male 13.5
Sample D Male 10.0
Periaqueductal gray
nTPM: 8.1
Samples: 3

Max nTPM: 9.2
Min nTPM: 6.6
Sample B Female 9.2
Sample C Male 8.4
Sample D Male 6.6
Substantia nigra
nTPM: 12.4
Samples: 4

Max nTPM: 16.6
Min nTPM: 9.9
Sample A Female 12.2
Sample B Female 9.9
Sample C Male 16.6
Sample D Male 10.9
Superior colliculi
nTPM: 9.6
Samples: 4

Max nTPM: 10.9
Min nTPM: 8.0
Sample A Female 9.3
Sample B Female 8.0
Sample C Male 10.2
Sample D Male 10.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 20.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 20.3
Samples: 4

Max nTPM: 21.6
Min nTPM: 18.2
Sample A Male 21.6
Sample B Male 18.2
Sample C Female 20.0
Sample D Female 21.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.9
75774635 Antisense, RP_060530_01_A12, Mouse strain C57BL/6J (56 days, male) 2.9
75773706 Antisense, RP_060530_01_A12, Mouse strain C57BL/6J (56 days, male) 2.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.