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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:60.8 nTPM
HPA:60.8 nTPM
GTEx:48.9 nTPM
FANTOM5:48.9 Scaled Tags Per Million
Pig:43.4 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 60.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 58.7
1981 Female, age 72, midline 62.9
2194 Female, age 79, both hemispheres 60.0
2565 Male, age 75, midline 60.0
2816 Male, age 47, midline 56.2
2048 Male, age 55, midline 54.2
Cervical spinal cord, dorsal horn
nTPM: 59.1
2069 Male, age 47, both hemispheres 63.0
2173 Female, age 72, unknown 61.5
1877 Male, age 55, unknown 58.4
2721 Male, age 90, both hemispheres 58.3
2296 Male, age 66, both hemispheres 58.2
2297 Male, age 75, both hemispheres 55.5
Cervical spinal cord, ventral horn
nTPM: 60.8
2809 Male, age 90, both hemispheres 69.3
2098 Female, age 72, unknown 65.6
2295 Male, age 66, both hemispheres 58.1
2480 Male, age 75, both hemispheres 57.8
2068 Male, age 55, unknown 57.6
2820 Female, age 79, both hemispheres 56.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 48.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 48.9
Samples: 159

Max nTPM: 80.3
Min nTPM: 25.8
Std nTPM: 8.9
Median nTPM: 48.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 80.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 80.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 73.1
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 67.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 65.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 65.6
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 65.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 64.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 64.3
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 63.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 63.1
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 62.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 62.1
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 61.4
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 61.0
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 60.8
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 60.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 60.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 60.5
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 59.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 59.9
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 59.2
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 58.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 57.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 57.8
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 57.5
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 57.4
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 56.9
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 56.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 56.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 56.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 56.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 56.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 55.3
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 55.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 54.4
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 54.2
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 54.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 53.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 53.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 53.1
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 52.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 52.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 52.3
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 52.3
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 52.0
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 51.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 51.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 51.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 51.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 51.5
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 51.5
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 51.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 51.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 51.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 50.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 50.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 50.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 50.6
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 50.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 50.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 50.2
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 50.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 50.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 50.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 50.1
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 50.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 50.1
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 50.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 50.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 49.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 49.7
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 49.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 49.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 49.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 48.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 48.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 48.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 48.4
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 48.2
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 48.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 47.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 47.7
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 47.7
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 47.6
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 47.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 47.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 47.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 47.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 46.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 46.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 46.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 46.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 46.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 45.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 45.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 45.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 45.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 45.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 45.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 45.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 45.2
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 45.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 44.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 44.8
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 44.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 44.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 44.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 44.6
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 44.5
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 44.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 44.3
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 44.2
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 44.2
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 43.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 43.7
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 43.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 43.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 43.1
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 43.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 42.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 42.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 42.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 42.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 42.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 42.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 41.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 41.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 41.6
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 41.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 41.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 41.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 41.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 41.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 40.9
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 40.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 40.4
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 40.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 40.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 39.9
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 39.7
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 39.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 39.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 39.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 39.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 39.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 38.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 37.9
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 37.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 37.1
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 36.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 36.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 34.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 34.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 34.1
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 33.6
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 31.2
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 26.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 25.8
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 48.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 48.9
FF:10159-103A6 76 years, female 57.0
FF:10181-103D1 60 years, female 40.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 43.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 43.4
Samples: 4

Max nTPM: 52.0
Min nTPM: 38.1
Sample A Female 40.3
Sample B Female 38.1
Sample C Male 52.0
Sample D Male 43.2
Ventral spinal cord
nTPM: 42.9
Samples: 4

Max nTPM: 50.8
Min nTPM: 36.7
Sample A Female 38.0
Sample B Female 46.0
Sample C Male 50.8
Sample D Male 36.7

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