BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:5.5 nTPM
HPA:5.5 nTPM
GTEx:11.5 nTPM
FANTOM5:27.1 Scaled Tags Per Million
Pig:13.0 nTPM
Mouse:8.1 nTPM
Allen mouse:2.2 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA028983
Glial cells Not detected
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 5.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 5.5
1781 Male, age 74, unknown 9.6
2846 Female, age 79, unknown 8.9
2290 Female, age 72, unknown 8.1
2289 Male, age 61, right hemisphere 7.0
1857 Female, age 85, left hemisphere 3.8
1854 Male, age 80, left hemisphere 3.1
2481 Female, age 94, left hemisphere 2.3
2288 Male, age 75, left hemisphere 0.9
Claustrum
nTPM: 1.7
2196 Female, age 79, unknown 5.3
2645 Female, age 72, unknown 2.9
2491 Male, age 75, both hemispheres 2.5
2284 Female, age 91, both hemispheres 2.2
2198 Male, age 80, both hemispheres 1.0
1956 Male, age 74, unknown 0.9
2568 Male, age 61, both hemispheres 0.6
2392 Female, age 94, both hemispheres 0.3
2292 Female, age 85, both hemispheres 0.0
Globus pallidus, externus
nTPM: 0.0
2646 Male, age 61, right hemisphere 0.3
1996 Male, age 80, right hemisphere 0.0
2395 Male, age 75, both hemispheres 0.0
2567 Female, age 72, unknown 0.0
2772 Female, age 79, unknown 0.0
Globus pallidus, internus
nTPM: 0.1
2483 Female, age 94, right hemisphere 0.8
1818 Male, age 74, unknown 0.0
2037 Male, age 80, right hemisphere 0.0
2111 Female, age 85, right hemisphere 0.0
2287 Male, age 75, right hemisphere 0.0
2566 Female, age 72, unknown 0.0
2778 Female, age 91, both hemispheres 0.0
Nucleus accumbens
nTPM: 4.9
2698 Female, age 72, unknown 8.7
1856 Female, age 91, right hemisphere 8.1
1783 Male, age 74, unknown 7.6
2824 Male, age 61, right hemisphere 5.9
1806 Female, age 85, left hemisphere 4.3
2391 Female, age 94, left hemisphere 1.7
2732 Male, age 80, right hemisphere 1.5
2286 Male, age 75, left hemisphere 1.2
Nucleus basalis of Meynert
nTPM: 2.8
2484 Female, age 94, left hemisphere 7.2
2393 Male, age 80, right hemisphere 2.1
2569 Male, age 61, both hemispheres 1.2
2821 Male, age 75, both hemispheres 0.8
Nucleus of the diagonal band
nTPM: 2.9
1979 Male, age 74, unknown 7.6
1812 Female, age 91, both hemispheres 3.6
2775 Male, age 80, right hemisphere 1.3
2195 Female, age 85, both hemispheres 1.1
2029 Male, age 61, right hemisphere 0.8
Olfactory tubercle
nTPM: 1.7
2856 Male, age 75, right hemisphere 2.9
1998 Female, age 91, both hemispheres 2.8
1846 Male, age 80, right hemisphere 1.2
2487 Female, age 94, left hemisphere 0.0
Putamen
nTPM: 5.5
2466 Female, age 79, unknown 7.9
2482 Female, age 94, left hemisphere 6.8
1937 Female, age 91, right hemisphere 6.1
2489 Female, age 72, unknown 5.6
1838 Male, age 80, right hemisphere 5.2
1829 Male, age 74, unknown 4.8
2647 Male, age 75, left hemisphere 2.1
Septal nuclei
nTPM: 3.2
2199 Male, age 80, right hemisphere 7.7
2031 Female, age 72, unknown 5.2
2009 Female, age 91, both hemispheres 3.7
1960 Male, age 74, unknown 2.9
2059 Female, age 85, both hemispheres 2.2
2394 Male, age 61, left hemisphere 1.1
2629 Female, age 94, right hemisphere 0.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 11.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 10.2
Samples: 246

Max nTPM: 113.4
Min nTPM: 0.0
Std nTPM: 13.3
Median nTPM: 7.0
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 113.4
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 111.7
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 68.9
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 65.3
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 63.0
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 45.0
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 38.4
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 37.7
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 37.4
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 35.7
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 33.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 11.1
Samples: 246

Max nTPM: 167.7
Min nTPM: 0.0
Std nTPM: 12.7
Median nTPM: 8.8
GTEX-12WSE-0011-R6b-SM-5LZV5 20-29 years, male 167.7
GTEX-1F6IF-0011-R6a-SM-9QEIO 60-69 years, male 53.4
GTEX-1GN73-0011-R6b-SM-CJI2T 60-69 years, male 50.7
GTEX-1IKK5-0011-R6b-SM-A9SLY 60-69 years, male 48.7
GTEX-1HB9E-0011-R6b-SM-A9G1P 50-59 years, male 42.2
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 35.1
GTEX-17MF6-0011-R6b-SM-7LG6G 40-49 years, male 29.3
GTEX-1E1VI-0011-R6a-SM-9OSVJ 50-59 years, male 28.7
GTEX-13VXU-0011-R6a-SM-5SI71 50-59 years, male 27.7
GTEX-1B8SF-0011-R6b-SM-7MXUD 60-69 years, male 25.3
GTEX-1GMRU-0011-R6b-SM-A9G3B 50-59 years, male 24.5
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Brain - Putamen (basal ganglia)
Average nTPM: 11.5
Samples: 205

Max nTPM: 100.0
Min nTPM: 0.3
Std nTPM: 13.6
Median nTPM: 8.5
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 100.0
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 76.6
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 70.0
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 63.6
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 61.7
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 58.7
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 56.0
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 50.5
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 49.7
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 41.0
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 30.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 27.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 20.3
FF:10164-103B2 76 years, female 20.3
Globus pallidus
Scaled Tags Per Million: 4.4
FF:10175-103C4 60 years, female 6.3
FF:10161-103A8 76 years, female 2.5
Nucleus accumbens
Scaled Tags Per Million: 27.1
FF:10037-101F1 23-56 years, mixed 27.1
Putamen
Scaled Tags Per Million: 23.6
FF:10176-103C5 60 years, female 23.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 13.0
Pig sample Sample description nTPM
Caudate
nTPM: 13.0
Samples: 4

Max nTPM: 15.9
Min nTPM: 10.2
Sample A Female 10.2
Sample B Female 12.8
Sample C Male 13.0
Sample D Male 15.9
Putamen
nTPM: 13.0
Samples: 4

Max nTPM: 17.8
Min nTPM: 5.2
Sample A Female 5.2
Sample B Female 12.7
Sample C Male 16.3
Sample D Male 17.8
Septum
nTPM: 7.1
Samples: 4

Max nTPM: 13.6
Min nTPM: 1.5
Sample A Female 7.2
Sample B Female 6.2
Sample C Male 1.5
Sample D Male 13.6
Ventral pallidum
nTPM: 7.5
Samples: 4

Max nTPM: 10.1
Min nTPM: 2.4
Sample A Female 10.1
Sample B Female 7.2
Sample C Male 2.4
Sample D Male 10.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 8.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 8.1
Samples: 4

Max nTPM: 14.8
Min nTPM: 3.9
Sample A Male 8.6
Sample B Male 14.8
Sample C Female 3.9
Sample D Female 5.2
Septum
nTPM: 7.8
Samples: 4

Max nTPM: 12.3
Min nTPM: 5.1
Sample A Male 5.1
Sample B Male 12.3
Sample C Female 8.1
Sample D Female 5.6
Ventral forebrain
nTPM: 5.4
Samples: 4

Max nTPM: 6.2
Min nTPM: 4.8
Sample A Male 5.5
Sample B Male 4.8
Sample C Female 6.2
Sample D Female 4.9

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 2.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 2.2
71832931 Antisense, RP_051005_03_H11, Mouse strain C57BL/6J (56 days, male) 2.2
74800827 Antisense, RP_051005_03_H11, Mouse strain C57BL/6J (56 days, male) 0.6
Pallidum
Expression energy: 0.8
71832931 Antisense, RP_051005_03_H11, Mouse strain C57BL/6J (56 days, male) 0.8
74800827 Antisense, RP_051005_03_H11, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

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