MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:17.8 nTPM
HPA:17.8 nTPM
GTEx:14.2 nTPM
FANTOM5:37.5 Scaled Tags Per Million
Pig:9.1 nTPM
Mouse:60.0 nTPM
Allen mouse:5.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 17.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 14.6
2219 Male, age 76, both hemispheres 22.5
2019 Male, age 18, unknown 17.5
2586 Male, age 75, left hemisphere 16.2
1830 Male, age 51, unknown 15.0
2411 Female, age 72, unknown 14.8
1870 Female, age 42, unknown 14.5
2666 Male, age 74, left hemisphere 12.9
1833 Male, age 53, unknown 12.7
2828 Female, age 72, unknown 10.2
1827 Male, age 72, unknown 9.3
Dorsal raphe nucleus
nTPM: 12.7
1828 Male, age 53, unknown 16.6
2047 Male, age 72, unknown 15.3
2750 Male, age 76, both hemispheres 12.9
2016 Female, age 72, unknown 10.6
2298 Female, age 72, unknown 8.0
Inferior colliculus
nTPM: 13.3
1890 Male, age 53, unknown 15.4
2097 Female, age 72, unknown 14.6
1848 Female, age 42, unknown 12.3
2849 Male, age 72, unknown 10.7
Median raphe nucleus
nTPM: 10.4
2220 Male, age 76, midline 10.4
Pedunculopontine tegmental nucleus
nTPM: 14.9
1921 Female, age 85, both hemispheres 15.9
2334 Male, age 80, both hemispheres 14.9
2338 Male, age 61, both hemispheres 14.0
Periaquaductal grey, anterior
nTPM: 12.1
2502 Female, age 75, unknown 16.4
1947 Male, age 18, unknown 11.4
1795 Male, age 51, unknown 8.5
Periaquaductal grey, dorsal
nTPM: 8.8
2464 Female, age 72, unknown 10.2
1831 Male, age 72, unknown 10.1
2850 Male, age 76, both hemispheres 8.2
1840 Male, age 53, unknown 6.5
Periaquaductal grey, lateral
nTPM: 10.2
2272 Male, age 74, both hemispheres 12.2
2053 Male, age 18, unknown 11.5
2140 Male, age 76, both hemispheres 7.1
Pretectal area
nTPM: 10.0
1817 Female, age 42, unknown 13.1
2407 Male, age 75, both hemispheres 12.5
2273 Male, age 74, both hemispheres 11.0
2007 Male, age 72, unknown 10.9
2825 Male, age 18, unknown 10.1
1815 Male, age 53, unknown 9.9
1944 Female, age 72, unknown 9.2
1816 Male, age 51, unknown 8.6
2224 Female, age 72, unknown 8.4
2316 Male, age 76, right hemisphere 8.3
2667 Female, age 75, unknown 8.2
Red nucleus
nTPM: 17.8
1821 Female, age 72, unknown 23.5
1865 Male, age 51, unknown 21.2
1954 Female, age 42, unknown 19.1
2588 Male, age 74, left hemisphere 18.5
1904 Male, age 53, unknown 18.1
2227 Male, age 72, unknown 17.8
2769 Male, age 72, unknown 17.7
2584 Male, age 75, left hemisphere 16.2
2785 Male, age 18, unknown 15.4
2823 Male, age 76, right hemisphere 15.4
2725 Female, age 75, unknown 15.3
2503 Female, age 72, unknown 14.9
Substantia nigra
nTPM: 11.6
1941 Male, age 53, unknown 19.4
2241 Male, age 72, unknown 12.8
1889 Female, age 72, unknown 12.6
2583 Male, age 75, right hemisphere 12.1
1851 Male, age 51, unknown 11.7
2409 Female, age 72, unknown 11.7
2699 Male, age 18, unknown 10.5
1916 Female, age 42, unknown 10.4
2590 Female, age 75, unknown 7.8
2665 Male, age 74, both hemispheres 6.6
Superior colliculus
nTPM: 11.9
2587 Male, age 74, left hemisphere 16.9
2668 Female, age 75, unknown 16.4
1913 Female, age 42, unknown 13.6
1839 Male, age 51, unknown 13.4
1895 Male, age 76, right hemisphere 12.9
1995 Male, age 72, unknown 11.2
2261 Male, age 18, unknown 9.6
2087 Female, age 72, unknown 9.0
1796 Male, age 53, unknown 8.5
2664 Male, age 75, both hemispheres 8.0
Ventral tegmental area
nTPM: 12.9
2223 Female, age 72, unknown 20.9
2410 Female, age 72, unknown 15.0
1942 Male, age 51, unknown 12.6
1915 Female, age 42, unknown 10.5
2218 Male, age 76, both hemispheres 9.7
2021 Male, age 53, unknown 8.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 14.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 14.2
Samples: 139

Max nTPM: 71.2
Min nTPM: 1.5
Std nTPM: 9.8
Median nTPM: 12.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 71.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 52.4
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 46.8
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 44.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 40.7
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 38.7
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 35.1
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 30.0
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 29.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 28.6
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 26.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 37.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 37.5
FF:10158-103A5 76 years, female 37.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 9.1
Pig sample Sample description nTPM
Midbrain
nTPM: 8.1
Samples: 4

Max nTPM: 10.9
Min nTPM: 4.7
Sample A Female 10.9
Sample B Female 4.7
Sample C Male 7.6
Sample D Male 9.2
Periaqueductal gray
nTPM: 4.9
Samples: 3

Max nTPM: 5.2
Min nTPM: 4.4
Sample B Female 5.2
Sample C Male 5.1
Sample D Male 4.4
Substantia nigra
nTPM: 5.3
Samples: 4

Max nTPM: 6.8
Min nTPM: 4.0
Sample A Female 5.7
Sample B Female 4.0
Sample C Male 4.7
Sample D Male 6.8
Superior colliculi
nTPM: 9.1
Samples: 4

Max nTPM: 9.8
Min nTPM: 8.5
Sample A Female 8.5
Sample B Female 9.8
Sample C Male 8.9
Sample D Male 9.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 60.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 60.0
Samples: 4

Max nTPM: 63.9
Min nTPM: 58.0
Sample A Male 58.0
Sample B Male 58.7
Sample C Female 63.9
Sample D Female 59.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.8
68203436 Antisense, RP_041018_01_A11, Mouse strain C57BL/6J (56 days, male) 5.8
67850952 Antisense, RP_041018_01_A11, Mouse strain C57BL/6J (56 days, male) 4.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.