MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:39.7 nTPM
HPA:39.7 nTPM
GTEx:35.4 nTPM
FANTOM5:45.3 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 39.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 36.9
2586 Male, age 75, left hemisphere 50.3
2828 Female, age 72, unknown 43.1
1827 Male, age 72, unknown 36.6
2019 Male, age 18, unknown 36.0
1870 Female, age 42, unknown 35.4
1833 Male, age 53, unknown 35.2
2219 Male, age 76, both hemispheres 33.9
2666 Male, age 74, left hemisphere 33.0
1830 Male, age 51, unknown 32.9
2411 Female, age 72, unknown 32.4
Dorsal raphe nucleus
nTPM: 35.0
2016 Female, age 72, unknown 36.5
2047 Male, age 72, unknown 36.4
1828 Male, age 53, unknown 35.2
2298 Female, age 72, unknown 33.7
2750 Male, age 76, both hemispheres 33.2
Inferior colliculus
nTPM: 37.5
1848 Female, age 42, unknown 41.0
2849 Male, age 72, unknown 38.9
2097 Female, age 72, unknown 35.9
1890 Male, age 53, unknown 34.2
Median raphe nucleus
nTPM: 35.0
2220 Male, age 76, midline 35.0
Pedunculopontine tegmental nucleus
nTPM: 33.0
1921 Female, age 85, both hemispheres 35.1
2334 Male, age 80, both hemispheres 34.6
2338 Male, age 61, both hemispheres 29.1
Periaquaductal grey, anterior
nTPM: 39.7
2502 Female, age 75, unknown 42.9
1795 Male, age 51, unknown 39.7
1947 Male, age 18, unknown 36.6
Periaquaductal grey, dorsal
nTPM: 35.7
2464 Female, age 72, unknown 38.8
1840 Male, age 53, unknown 36.9
2850 Male, age 76, both hemispheres 33.8
1831 Male, age 72, unknown 33.5
Periaquaductal grey, lateral
nTPM: 37.6
2140 Male, age 76, both hemispheres 39.4
2053 Male, age 18, unknown 38.4
2272 Male, age 74, both hemispheres 35.1
Pretectal area
nTPM: 38.3
2273 Male, age 74, both hemispheres 39.9
2316 Male, age 76, right hemisphere 39.9
1944 Female, age 72, unknown 39.8
2007 Male, age 72, unknown 39.0
1816 Male, age 51, unknown 38.9
2667 Female, age 75, unknown 38.9
2407 Male, age 75, both hemispheres 38.5
2224 Female, age 72, unknown 37.6
2825 Male, age 18, unknown 37.3
1815 Male, age 53, unknown 36.4
1817 Female, age 42, unknown 34.7
Red nucleus
nTPM: 36.3
2588 Male, age 74, left hemisphere 41.6
2725 Female, age 75, unknown 40.7
2227 Male, age 72, unknown 38.1
2785 Male, age 18, unknown 37.7
1954 Female, age 42, unknown 37.4
2769 Male, age 72, unknown 37.2
2503 Female, age 72, unknown 36.5
2584 Male, age 75, left hemisphere 35.2
2823 Male, age 76, right hemisphere 33.8
1865 Male, age 51, unknown 33.2
1904 Male, age 53, unknown 33.2
1821 Female, age 72, unknown 31.5
Substantia nigra
nTPM: 33.9
1941 Male, age 53, unknown 37.8
2665 Male, age 74, both hemispheres 35.7
2583 Male, age 75, right hemisphere 35.6
2590 Female, age 75, unknown 35.4
1851 Male, age 51, unknown 34.5
2699 Male, age 18, unknown 33.7
1916 Female, age 42, unknown 33.4
1889 Female, age 72, unknown 32.8
2241 Male, age 72, unknown 32.0
2409 Female, age 72, unknown 28.0
Superior colliculus
nTPM: 37.7
2664 Male, age 75, both hemispheres 46.5
1796 Male, age 53, unknown 40.7
2261 Male, age 18, unknown 39.6
2087 Female, age 72, unknown 39.5
1839 Male, age 51, unknown 38.7
1913 Female, age 42, unknown 37.6
1895 Male, age 76, right hemisphere 36.1
1995 Male, age 72, unknown 35.0
2587 Male, age 74, left hemisphere 34.1
2668 Female, age 75, unknown 29.0
Ventral tegmental area
nTPM: 35.4
1942 Male, age 51, unknown 39.7
2021 Male, age 53, unknown 36.3
2218 Male, age 76, both hemispheres 35.1
1915 Female, age 42, unknown 34.6
2410 Female, age 72, unknown 33.7
2223 Female, age 72, unknown 33.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 35.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 35.4
Samples: 139

Max nTPM: 66.4
Min nTPM: 15.0
Std nTPM: 9.8
Median nTPM: 35.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 66.4
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 58.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 56.2
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 55.8
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 54.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 53.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 53.3
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 52.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 52.7
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 52.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 52.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 45.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 45.3
FF:10158-103A5 76 years, female 45.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
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