MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:7.2 nTPM
HPA:7.2 nTPM
GTEx:5.5 nTPM
FANTOM5:28.8 Scaled Tags Per Million
Pig:24.9 nTPM
Mouse:29.9 nTPM
Allen mouse:1.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 7.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 5.9
2411 Female, age 72, unknown 8.0
1827 Male, age 72, unknown 7.5
2219 Male, age 76, both hemispheres 7.4
1833 Male, age 53, unknown 5.9
1830 Male, age 51, unknown 5.7
2019 Male, age 18, unknown 5.7
1870 Female, age 42, unknown 5.4
2828 Female, age 72, unknown 5.0
2586 Male, age 75, left hemisphere 4.9
2666 Male, age 74, left hemisphere 3.4
Dorsal raphe nucleus
nTPM: 5.5
2298 Female, age 72, unknown 6.6
1828 Male, age 53, unknown 5.8
2016 Female, age 72, unknown 5.3
2047 Male, age 72, unknown 4.9
2750 Male, age 76, both hemispheres 4.7
Inferior colliculus
nTPM: 7.2
1890 Male, age 53, unknown 7.5
2849 Male, age 72, unknown 7.2
1848 Female, age 42, unknown 7.1
2097 Female, age 72, unknown 7.1
Median raphe nucleus
nTPM: 4.6
2220 Male, age 76, midline 4.6
Pedunculopontine tegmental nucleus
nTPM: 5.6
1921 Female, age 85, both hemispheres 6.8
2338 Male, age 61, both hemispheres 5.8
2334 Male, age 80, both hemispheres 4.2
Periaquaductal grey, anterior
nTPM: 6.7
1947 Male, age 18, unknown 7.6
2502 Female, age 75, unknown 6.7
1795 Male, age 51, unknown 5.7
Periaquaductal grey, dorsal
nTPM: 6.6
1831 Male, age 72, unknown 7.3
2464 Female, age 72, unknown 7.0
1840 Male, age 53, unknown 6.6
2850 Male, age 76, both hemispheres 5.6
Periaquaductal grey, lateral
nTPM: 6.0
2053 Male, age 18, unknown 6.4
2272 Male, age 74, both hemispheres 6.4
2140 Male, age 76, both hemispheres 5.1
Pretectal area
nTPM: 6.6
1944 Female, age 72, unknown 9.8
1816 Male, age 51, unknown 8.4
2224 Female, age 72, unknown 7.5
2316 Male, age 76, right hemisphere 6.7
2007 Male, age 72, unknown 6.6
2667 Female, age 75, unknown 6.4
2825 Male, age 18, unknown 6.3
2273 Male, age 74, both hemispheres 6.1
1817 Female, age 42, unknown 5.4
1815 Male, age 53, unknown 5.0
2407 Male, age 75, both hemispheres 4.7
Red nucleus
nTPM: 4.9
2823 Male, age 76, right hemisphere 6.3
1821 Female, age 72, unknown 6.2
1865 Male, age 51, unknown 5.0
2503 Female, age 72, unknown 5.0
2584 Male, age 75, left hemisphere 4.9
2725 Female, age 75, unknown 4.8
2785 Male, age 18, unknown 4.8
1904 Male, age 53, unknown 4.6
2769 Male, age 72, unknown 4.6
1954 Female, age 42, unknown 4.4
2227 Male, age 72, unknown 4.0
2588 Male, age 74, left hemisphere 3.8
Substantia nigra
nTPM: 5.6
2409 Female, age 72, unknown 8.5
2241 Male, age 72, unknown 7.6
2590 Female, age 75, unknown 6.8
2665 Male, age 74, both hemispheres 6.1
1941 Male, age 53, unknown 5.8
2583 Male, age 75, right hemisphere 5.8
1889 Female, age 72, unknown 5.4
2699 Male, age 18, unknown 3.8
1916 Female, age 42, unknown 3.6
1851 Male, age 51, unknown 2.6
Superior colliculus
nTPM: 5.9
1895 Male, age 76, right hemisphere 9.5
2087 Female, age 72, unknown 6.8
2261 Male, age 18, unknown 6.8
1839 Male, age 51, unknown 6.4
1796 Male, age 53, unknown 6.2
1913 Female, age 42, unknown 6.0
2664 Male, age 75, both hemispheres 4.8
2668 Female, age 75, unknown 4.7
2587 Male, age 74, left hemisphere 4.3
1995 Male, age 72, unknown 3.5
Ventral tegmental area
nTPM: 4.7
1942 Male, age 51, unknown 6.6
2021 Male, age 53, unknown 5.0
2218 Male, age 76, both hemispheres 4.8
1915 Female, age 42, unknown 3.9
2223 Female, age 72, unknown 3.9
2410 Female, age 72, unknown 3.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 5.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 5.5
Samples: 139

Max nTPM: 8.8
Min nTPM: 3.0
Std nTPM: 1.0
Median nTPM: 5.4
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 8.8
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 8.4
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 8.3
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 8.2
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 8.2
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 8.2
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 7.8
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 7.7
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 7.4
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 7.2
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 7.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 28.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 28.8
FF:10158-103A5 76 years, female 28.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 24.9
Pig sample Sample description nTPM
Midbrain
nTPM: 24.2
Samples: 4

Max nTPM: 26.8
Min nTPM: 20.4
Sample A Female 20.4
Sample B Female 23.3
Sample C Male 26.8
Sample D Male 26.4
Periaqueductal gray
nTPM: 21.6
Samples: 3

Max nTPM: 23.6
Min nTPM: 20.2
Sample B Female 21.1
Sample C Male 23.6
Sample D Male 20.2
Substantia nigra
nTPM: 22.0
Samples: 4

Max nTPM: 28.2
Min nTPM: 15.4
Sample A Female 28.2
Sample B Female 20.1
Sample C Male 24.2
Sample D Male 15.4
Superior colliculi
nTPM: 24.9
Samples: 4

Max nTPM: 26.6
Min nTPM: 22.8
Sample A Female 26.6
Sample B Female 22.8
Sample C Male 25.9
Sample D Male 24.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 29.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 29.9
Samples: 4

Max nTPM: 30.6
Min nTPM: 28.5
Sample A Male 28.5
Sample B Male 30.4
Sample C Female 30.6
Sample D Female 30.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.6
68845831 Antisense, RP_050224_02_F05, Mouse strain C57BL/6J (56 days, male) 1.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.