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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:149.9 nTPM
HPA:149.9 nTPM
GTEx:200.3 nTPM
FANTOM5:51.7 Scaled Tags Per Million
Pig:91.0 nTPM
Mouse:111.4 nTPM
Allen mouse:0.8 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 149.9
Sample id Sample description nTPM
Amygdala
nTPM: 149.9
2514 Male, age 75, right hemisphere 155.2
2814 Male, age 76, right hemisphere 151.7
1987 Female, age 91, left hemisphere 149.9
2695 Female, age 67, right hemisphere 146.5
2517 Female, age 94, left hemisphere 146.4
Basal amygdala
nTPM: 143.7
2685 Female, age 94, left hemisphere 148.0
2110 Male, age 80, left hemisphere 147.6
1955 Male, age 76, both hemispheres 144.6
2609 Male, age 75, right hemisphere 144.5
2243 Female, age 91, right hemisphere 139.0
2827 Female, age 67, right hemisphere 138.4
Central amygdala
nTPM: 147.7
2826 Female, age 94, left hemisphere 151.7
1905 Male, age 76, both hemispheres 150.9
2515 Male, age 75, right hemisphere 150.0
2239 Male, age 80, left hemisphere 146.0
2701 Female, age 91, right hemisphere 139.8
Corticomedial amygdala
nTPM: 147.2
2429 Female, age 94, left hemisphere 152.8
2829 Male, age 80, left hemisphere 150.1
2428 Male, age 75, right hemisphere 149.3
2240 Male, age 76, both hemispheres 148.0
2242 Female, age 91, right hemisphere 145.4
2535 Female, age 67, right hemisphere 137.8
Lateral amygdala
nTPM: 144.2
1883 Male, age 76, both hemispheres 152.1
2516 Male, age 75, right hemisphere 149.1
2534 Female, age 94, left hemisphere 149.1
2830 Female, age 67, right hemisphere 140.1
2256 Male, age 80, left hemisphere 137.9
2255 Female, age 91, right hemisphere 137.0
Stria terminalis, bed nucleus
nTPM: 149.0
1974 Female, age 91, both hemispheres 157.7
2486 Female, age 94, both hemispheres 148.9
2201 Male, age 74, unknown 140.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 200.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 200.3
Samples: 152

Max nTPM: 607.7
Min nTPM: 109.3
Std nTPM: 72.1
Median nTPM: 185.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 607.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 549.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 465.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 422.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 379.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 369.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 316.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 309.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 302.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 301.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 296.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 295.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 293.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 288.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 288.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 286.4
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 277.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 273.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 265.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 263.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 258.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 257.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 256.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 243.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 241.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 239.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 236.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 232.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 228.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 227.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 227.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 224.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 224.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 223.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 222.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 219.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 216.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 216.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 216.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 216.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 215.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 215.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 213.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 213.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 211.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 211.7
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 210.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 209.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 206.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 205.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 202.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 202.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 201.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 200.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 200.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 199.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 199.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 198.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 198.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 197.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 196.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 196.7
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 196.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 194.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 194.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 193.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 192.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 192.8
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 192.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 191.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 191.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 191.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 190.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 189.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 186.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 186.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 184.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 184.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 182.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 180.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 179.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 179.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 178.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 177.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 177.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 176.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 176.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 176.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 175.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 175.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 175.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 174.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 172.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 171.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 170.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 169.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 169.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 169.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 169.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 168.3
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 167.5
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 166.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 166.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 165.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 164.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 164.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 163.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 162.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 161.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 161.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 159.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 158.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 158.2
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 156.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 156.7
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 156.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 155.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 155.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 154.0
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 153.9
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 153.3
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 152.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 151.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 151.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 150.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 148.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 148.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 148.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 144.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 143.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 143.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 143.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 143.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 142.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 141.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 139.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 139.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 137.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 135.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 134.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 133.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 131.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 130.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 128.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 128.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 123.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 123.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 119.6
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 114.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 113.9
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 112.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 109.3
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 51.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 51.7
FF:10151-102I7 76 years, female 51.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 91.0
Pig sample Sample description nTPM
Amygdala
nTPM: 91.0
Samples: 4

Max nTPM: 121.9
Min nTPM: 71.2
Sample A Female 121.9
Sample B Female 95.2
Sample C Male 71.2
Sample D Male 75.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 111.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 111.4
Samples: 4

Max nTPM: 114.0
Min nTPM: 105.9
Sample A Male 114.0
Sample B Male 113.4
Sample C Female 105.9
Sample D Female 112.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 0.8
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.8
73573289 Antisense, RP_051121_03_F10, Mouse strain C57BL/6J (56 days, male) 0.8

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