MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:156.2 nTPM
HPA:156.2 nTPM
GTEx:166.3 nTPM
FANTOM5:77.4 Scaled Tags Per Million
Pig:132.1 nTPM
Mouse:104.2 nTPM
Allen mouse:0.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 156.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 145.1
1870 Female, age 42, unknown 150.9
2019 Male, age 18, unknown 149.9
2411 Female, age 72, unknown 149.8
1827 Male, age 72, unknown 148.1
2828 Female, age 72, unknown 146.5
2219 Male, age 76, both hemispheres 142.6
1833 Male, age 53, unknown 142.4
1830 Male, age 51, unknown 142.3
2666 Male, age 74, left hemisphere 140.5
2586 Male, age 75, left hemisphere 137.9
Dorsal raphe nucleus
nTPM: 149.4
2298 Female, age 72, unknown 159.3
2750 Male, age 76, both hemispheres 148.5
2047 Male, age 72, unknown 148.2
1828 Male, age 53, unknown 146.9
2016 Female, age 72, unknown 144.3
Inferior colliculus
nTPM: 143.7
2097 Female, age 72, unknown 150.9
1890 Male, age 53, unknown 142.8
1848 Female, age 42, unknown 142.6
2849 Male, age 72, unknown 138.5
Median raphe nucleus
nTPM: 150.4
2220 Male, age 76, midline 150.4
Pedunculopontine tegmental nucleus
nTPM: 154.7
2338 Male, age 61, both hemispheres 158.3
2334 Male, age 80, both hemispheres 154.5
1921 Female, age 85, both hemispheres 151.4
Periaquaductal grey, anterior
nTPM: 151.2
2502 Female, age 75, unknown 152.8
1947 Male, age 18, unknown 151.4
1795 Male, age 51, unknown 149.3
Periaquaductal grey, dorsal
nTPM: 144.7
2850 Male, age 76, both hemispheres 146.6
1840 Male, age 53, unknown 145.1
1831 Male, age 72, unknown 143.8
2464 Female, age 72, unknown 143.4
Periaquaductal grey, lateral
nTPM: 147.0
2272 Male, age 74, both hemispheres 150.1
2053 Male, age 18, unknown 149.1
2140 Male, age 76, both hemispheres 141.8
Pretectal area
nTPM: 150.4
1816 Male, age 51, unknown 160.5
1944 Female, age 72, unknown 153.9
2007 Male, age 72, unknown 153.9
1817 Female, age 42, unknown 153.5
2273 Male, age 74, both hemispheres 151.9
2224 Female, age 72, unknown 151.8
1815 Male, age 53, unknown 151.7
2667 Female, age 75, unknown 145.0
2825 Male, age 18, unknown 144.5
2407 Male, age 75, both hemispheres 144.1
2316 Male, age 76, right hemisphere 143.8
Red nucleus
nTPM: 146.5
1821 Female, age 72, unknown 155.1
2725 Female, age 75, unknown 154.2
2823 Male, age 76, right hemisphere 148.6
1954 Female, age 42, unknown 147.9
1865 Male, age 51, unknown 146.4
2503 Female, age 72, unknown 146.4
1904 Male, age 53, unknown 145.6
2227 Male, age 72, unknown 145.5
2769 Male, age 72, unknown 143.6
2785 Male, age 18, unknown 142.6
2584 Male, age 75, left hemisphere 141.9
2588 Male, age 74, left hemisphere 139.8
Substantia nigra
nTPM: 156.2
1941 Male, age 53, unknown 170.4
2241 Male, age 72, unknown 165.8
1916 Female, age 42, unknown 163.6
1851 Male, age 51, unknown 162.3
1889 Female, age 72, unknown 156.2
2409 Female, age 72, unknown 152.5
2665 Male, age 74, both hemispheres 150.3
2699 Male, age 18, unknown 149.5
2590 Female, age 75, unknown 148.1
2583 Male, age 75, right hemisphere 143.7
Superior colliculus
nTPM: 147.3
2261 Male, age 18, unknown 154.5
2587 Male, age 74, left hemisphere 150.6
2668 Female, age 75, unknown 149.5
2087 Female, age 72, unknown 148.8
1895 Male, age 76, right hemisphere 148.3
1913 Female, age 42, unknown 146.7
1796 Male, age 53, unknown 146.5
1995 Male, age 72, unknown 144.8
2664 Male, age 75, both hemispheres 142.9
1839 Male, age 51, unknown 140.4
Ventral tegmental area
nTPM: 151.9
1915 Female, age 42, unknown 156.5
2410 Female, age 72, unknown 156.4
2218 Male, age 76, both hemispheres 152.0
1942 Male, age 51, unknown 150.2
2223 Female, age 72, unknown 150.2
2021 Male, age 53, unknown 146.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 166.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 166.3
Samples: 139

Max nTPM: 400.2
Min nTPM: 103.6
Std nTPM: 43.2
Median nTPM: 157.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 400.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 305.4
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 288.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 285.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 272.0
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 259.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 255.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 242.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 241.2
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 232.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 230.3
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 77.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 77.4
FF:10158-103A5 76 years, female 77.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 132.1
Pig sample Sample description nTPM
Midbrain
nTPM: 113.3
Samples: 4

Max nTPM: 126.2
Min nTPM: 99.7
Sample A Female 121.3
Sample B Female 106.1
Sample C Male 126.2
Sample D Male 99.7
Periaqueductal gray
nTPM: 84.6
Samples: 3

Max nTPM: 91.7
Min nTPM: 79.7
Sample B Female 82.4
Sample C Male 91.7
Sample D Male 79.7
Substantia nigra
nTPM: 116.6
Samples: 4

Max nTPM: 171.2
Min nTPM: 75.6
Sample A Female 171.2
Sample B Female 113.3
Sample C Male 106.3
Sample D Male 75.6
Superior colliculi
nTPM: 132.1
Samples: 4

Max nTPM: 147.4
Min nTPM: 93.8
Sample A Female 147.4
Sample B Female 141.0
Sample C Male 146.2
Sample D Male 93.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 104.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 104.2
Samples: 4

Max nTPM: 115.6
Min nTPM: 92.8
Sample A Male 115.6
Sample B Male 100.4
Sample C Female 92.8
Sample D Female 108.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
73573289 Antisense, RP_051121_03_F10, Mouse strain C57BL/6J (56 days, male) 0.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.