BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:5.8 nTPM
HPA:5.8 nTPM
GTEx:6.3 nTPM
FANTOM5:23.4 Scaled Tags Per Million
Pig:10.5 nTPM
Mouse:17.6 nTPM
Allen mouse:0.6 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA013810
Glial cells Medium
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 5.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 5.7
2290 Female, age 72, unknown 6.5
1857 Female, age 85, left hemisphere 6.1
2846 Female, age 79, unknown 5.8
2481 Female, age 94, left hemisphere 5.7
1854 Male, age 80, left hemisphere 5.6
2289 Male, age 61, right hemisphere 5.6
2288 Male, age 75, left hemisphere 5.3
1781 Male, age 74, unknown 5.1
Claustrum
nTPM: 4.7
2645 Female, age 72, unknown 5.4
2284 Female, age 91, both hemispheres 5.2
2392 Female, age 94, both hemispheres 5.2
2196 Female, age 79, unknown 4.6
2198 Male, age 80, both hemispheres 4.5
2292 Female, age 85, both hemispheres 4.5
2491 Male, age 75, both hemispheres 4.3
2568 Male, age 61, both hemispheres 4.3
1956 Male, age 74, unknown 4.2
Globus pallidus, externus
nTPM: 5.8
2395 Male, age 75, both hemispheres 6.8
2772 Female, age 79, unknown 6.0
1996 Male, age 80, right hemisphere 5.8
2646 Male, age 61, right hemisphere 5.6
2567 Female, age 72, unknown 4.8
Globus pallidus, internus
nTPM: 5.6
1818 Male, age 74, unknown 6.0
2037 Male, age 80, right hemisphere 5.9
2483 Female, age 94, right hemisphere 5.9
2287 Male, age 75, right hemisphere 5.8
2111 Female, age 85, right hemisphere 5.5
2778 Female, age 91, both hemispheres 5.3
2566 Female, age 72, unknown 4.9
Nucleus accumbens
nTPM: 5.3
1806 Female, age 85, left hemisphere 5.8
2824 Male, age 61, right hemisphere 5.7
2286 Male, age 75, left hemisphere 5.6
1856 Female, age 91, right hemisphere 5.2
2391 Female, age 94, left hemisphere 5.2
1783 Male, age 74, unknown 5.1
2732 Male, age 80, right hemisphere 5.1
2698 Female, age 72, unknown 4.8
Nucleus basalis of Meynert
nTPM: 5.8
2393 Male, age 80, right hemisphere 6.5
2484 Female, age 94, left hemisphere 6.0
2569 Male, age 61, both hemispheres 6.0
2821 Male, age 75, both hemispheres 4.6
Nucleus of the diagonal band
nTPM: 4.7
2195 Female, age 85, both hemispheres 4.9
1812 Female, age 91, both hemispheres 4.8
1979 Male, age 74, unknown 4.8
2029 Male, age 61, right hemisphere 4.6
2775 Male, age 80, right hemisphere 4.6
Olfactory tubercle
nTPM: 4.7
2856 Male, age 75, right hemisphere 5.1
1846 Male, age 80, right hemisphere 4.7
1998 Female, age 91, both hemispheres 4.7
2487 Female, age 94, left hemisphere 4.4
Putamen
nTPM: 5.8
2466 Female, age 79, unknown 6.4
1838 Male, age 80, right hemisphere 6.3
2489 Female, age 72, unknown 6.2
1829 Male, age 74, unknown 5.8
1937 Female, age 91, right hemisphere 5.6
2482 Female, age 94, left hemisphere 5.6
2647 Male, age 75, left hemisphere 4.5
Septal nuclei
nTPM: 5.1
2394 Male, age 61, left hemisphere 6.1
2199 Male, age 80, right hemisphere 5.3
1960 Male, age 74, unknown 5.1
2059 Female, age 85, both hemispheres 5.1
2009 Female, age 91, both hemispheres 5.0
2031 Female, age 72, unknown 5.0
2629 Female, age 94, right hemisphere 4.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 6.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 6.0
Samples: 246

Max nTPM: 13.8
Min nTPM: 3.3
Std nTPM: 1.4
Median nTPM: 5.8
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 13.8
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 12.8
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 12.2
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 11.6
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 10.0
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 9.6
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 9.5
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 9.2
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 9.0
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 8.8
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 8.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 5.4
Samples: 246

Max nTPM: 18.5
Min nTPM: 2.9
Std nTPM: 1.7
Median nTPM: 5.1
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 18.5
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 16.7
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 14.7
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 11.5
GTEX-13OVJ-0011-R6b-SM-5L3GH 50-59 years, female 10.9
GTEX-1B996-0011-R6b-SM-793AQ 60-69 years, male 10.2
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 9.4
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 9.0
GTEX-QDT8-0011-R6A-SM-32PKI 30-39 years, female 8.7
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 8.3
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 8.1
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Brain - Putamen (basal ganglia)
Average nTPM: 6.3
Samples: 205

Max nTPM: 21.6
Min nTPM: 3.4
Std nTPM: 2.0
Median nTPM: 5.9
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 21.6
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 13.5
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 12.2
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 11.3
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 11.1
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 10.3
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 10.2
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 10.2
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 10.1
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 10.0
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 9.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 23.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 17.5
FF:10164-103B2 76 years, female 17.5
Globus pallidus
Scaled Tags Per Million: 19.7
FF:10161-103A8 76 years, female 23.6
FF:10175-103C4 60 years, female 15.7
Nucleus accumbens
Scaled Tags Per Million: 22.9
FF:10037-101F1 23-56 years, mixed 22.9
Putamen
Scaled Tags Per Million: 23.4
FF:10176-103C5 60 years, female 23.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 10.5
Pig sample Sample description nTPM
Caudate
nTPM: 8.3
Samples: 4

Max nTPM: 9.5
Min nTPM: 7.8
Sample A Female 7.8
Sample B Female 7.9
Sample C Male 9.5
Sample D Male 7.8
Putamen
nTPM: 10.5
Samples: 4

Max nTPM: 13.6
Min nTPM: 8.1
Sample A Female 10.5
Sample B Female 8.1
Sample C Male 13.6
Sample D Male 9.6
Septum
nTPM: 9.9
Samples: 4

Max nTPM: 13.2
Min nTPM: 8.5
Sample A Female 9.1
Sample B Female 8.6
Sample C Male 13.2
Sample D Male 8.5
Ventral pallidum
nTPM: 9.1
Samples: 4

Max nTPM: 11.1
Min nTPM: 7.7
Sample A Female 7.7
Sample B Female 9.7
Sample C Male 11.1
Sample D Male 8.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 17.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 16.5
Samples: 4

Max nTPM: 22.5
Min nTPM: 12.1
Sample A Male 22.5
Sample B Male 12.1
Sample C Female 15.1
Sample D Female 16.4
Septum
nTPM: 17.6
Samples: 4

Max nTPM: 24.4
Min nTPM: 15.0
Sample A Male 15.8
Sample B Male 15.0
Sample C Female 24.4
Sample D Female 15.3
Ventral forebrain
nTPM: 15.1
Samples: 4

Max nTPM: 16.3
Min nTPM: 14.2
Sample A Male 14.2
Sample B Male 14.6
Sample C Female 15.4
Sample D Female 16.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.6
2603 Antisense, RP_040526_01_G10, Mouse strain C57BL/6J (56 days, male) 0.7
100144182 Antisense, RP_110421_01_F09, Mouse strain C57BL/6J (56 days, male) 0.5
Pallidum
Expression energy: 0.6
2603 Antisense, RP_040526_01_G10, Mouse strain C57BL/6J (56 days, male) 1.0
100144182 Antisense, RP_110421_01_F09, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas project is funded
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