HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
Mouse brain, Intensity
Hippocampal formationi 		121.338
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:39.9 nTPM
HPA:39.9 nTPM
GTEx:26.8 nTPM
FANTOM5:61.0 Scaled Tags Per Million
Pig:120.4 nTPM
Mouse:94.7 nTPM
Allen mouse:20.5 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA013820Antibody HPA031684
Glial cells Not detectedNot detected
Neuronal cells Not detectedLow





HIPPOCAMPAL FORMATION - Mouse brain profilei , antibody CAB079065
Hippocampal formation mean intensity 121.338
intensityi
FRONT BACK
Polymorph layer of the dentate gyrus 78.532
Molecular layer of the dentate gyrus 94.024
Granular dentate gyrus 30.434
CA1 - oriens layer 95.572
CA1 - pyramidal layer 48.930
CA1 - radiatum layer 92.128
CA2 - oriens layer 99.263
CA2 - pyramidal layer 52.288
CA2 - radiatum layer 102.834
CA3 - oriens layer 105.508
CA3 - pyramidal layer 42.426
CA3 - radiatum layer 107.105
Stratum lucidum 74.252
Lacunosum moleculare 98.884
Subiculum 68.198

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 39.9
Sample id Sample description nTPM
Hippocampus
nTPM: 13.1
2148 Female, age 91, left hemisphere 24.5
2621 Female, age 67, right hemisphere 20.4
1898 Male, age 80, left hemisphere 20.1
1855 Male, age 76, left hemisphere 11.3
1911 Female, age 85, right hemisphere 2.7
2529 Female, age 94, left hemisphere 0.0
Dentate gyrus
nTPM: 16.4
1927 Female, age 91, both hemispheres 33.0
2531 Female, age 67, both hemispheres 31.2
2246 Female, age 85, both hemispheres 11.2
2010 Male, age 76, both hemispheres 10.8
2528 Male, age 74, both hemispheres 6.9
2530 Female, age 94, left hemisphere 5.6
Entorhinal gyrus
nTPM: 20.4
2613 Female, age 94, left hemisphere 34.7
2764 Male, age 80, right hemisphere 27.4
1938 Female, age 85, left hemisphere 20.1
2686 Male, age 75, right hemisphere 19.0
1787 Male, age 76, left hemisphere 18.1
2117 Female, age 91, right hemisphere 3.0
Hippocampus, CA1
nTPM: 19.2
2749 Male, age 80, left hemisphere 41.8
2045 Male, age 76, both hemispheres 22.6
1873 Female, age 85, both hemispheres 16.1
2527 Male, age 74, both hemispheres 9.2
2082 Female, age 91, right hemisphere 6.1
Hippocampus, CA2
nTPM: 11.5
1892 Male, age 76, both hemispheres 18.7
1963 Male, age 80, left hemisphere 16.1
2437 Female, age 94, left hemisphere 15.2
1940 Female, age 85, left hemisphere 13.7
2113 Female, age 91, right hemisphere 5.6
2249 Male, age 74, both hemispheres 0.0
Hippocampus, CA3
nTPM: 19.8
2620 Female, age 94, left hemisphere 50.1
2861 Female, age 67, both hemispheres 29.4
2137 Male, age 80, left hemisphere 24.6
1867 Male, age 76, both hemispheres 10.4
1891 Female, age 85, both hemispheres 3.9
2436 Male, age 74, both hemispheres 0.2
Parahippocampal cortex
nTPM: 24.6
2693 Female, age 94, both hemispheres 43.6
2622 Female, age 67, right hemisphere 33.2
2245 Female, age 91, both hemispheres 31.5
2532 Female, age 72, left hemisphere 26.7
1850 Male, age 80, both hemispheres 26.6
2250 Female, age 67, right hemisphere 24.4
1933 Female, age 85, both hemispheres 23.9
1990 Female, age 91, right hemisphere 22.0
2018 Male, age 76, both hemispheres 10.1
2692 Male, age 74, both hemispheres 4.0
Perirhinal gyrus
nTPM: 39.9
2521 Female, age 94, right hemisphere 61.7
1847 Female, age 91, left hemisphere 43.0
1794 Male, age 80, right hemisphere 36.9
1841 Female, age 85, right hemisphere 32.5
2848 Male, age 76, right hemisphere 25.6
Subiculum
nTPM: 7.7
1977 Female, age 85, both hemispheres 17.6
1901 Male, age 80, both hemispheres 8.2
2619 Male, age 74, both hemispheres 7.3
2729 Female, age 91, right hemisphere 6.7
2438 Female, age 94, left hemisphere 6.6
2042 Male, age 76, both hemispheres 0.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 26.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 26.8
Samples: 197

Max nTPM: 71.1
Min nTPM: 0.4
Std nTPM: 16.8
Median nTPM: 24.6
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 71.1
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 69.2
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 67.6
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 66.9
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 66.5
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 64.7
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 62.3
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 58.9
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 58.0
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 57.5
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 56.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 61.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 61.0
FF:10169-103B7 60 years, female 86.8
FF:10153-102I9 76 years, female 35.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 120.4
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 60.5
Samples: 4

Max nTPM: 71.4
Min nTPM: 45.2
Sample A Female 71.4
Sample B Female 68.8
Sample C Male 45.2
Sample D Male 56.6
Entorhinal cortex
nTPM: 120.4
Samples: 4

Max nTPM: 137.0
Min nTPM: 103.1
Sample A Female 137.0
Sample B Female 103.1
Sample C Male 127.5
Sample D Male 114.0
Subiculum
nTPM: 68.8
Samples: 4

Max nTPM: 100.8
Min nTPM: 56.6
Sample A Female 100.8
Sample B Female 59.7
Sample C Male 56.6
Sample D Male 58.0
Ventral hippocampus
nTPM: 55.4
Samples: 4

Max nTPM: 66.6
Min nTPM: 38.8
Sample A Female 55.3
Sample B Female 38.8
Sample C Male 60.7
Sample D Male 66.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 94.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 94.7
Samples: 4

Max nTPM: 122.4
Min nTPM: 76.9
Sample A Male 89.8
Sample B Male 89.8
Sample C Female 76.9
Sample D Female 122.4
Hippocampal formation
nTPM: 81.0
Samples: 4

Max nTPM: 100.9
Min nTPM: 61.3
Sample A Male 61.3
Sample B Male 92.4
Sample C Female 100.9
Sample D Female 69.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 20.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 20.5
71247614 Antisense, RP_050331_02_H08, Mouse strain C57BL/6J (56 days, male) 20.5
69257594 Antisense, RP_050331_02_H08, Mouse strain C57BL/6J (56 days, male) 15.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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