MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:22.0 nTPM
HPA:22.0 nTPM
GTEx:13.4 nTPM
FANTOM5:26.2 Scaled Tags Per Million
Pig:11.0 nTPM
Mouse:19.0 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 22.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 19.7
1870 Female, age 42, unknown 21.3
2411 Female, age 72, unknown 21.0
1827 Male, age 72, unknown 20.6
2219 Male, age 76, both hemispheres 20.6
2019 Male, age 18, unknown 20.2
1833 Male, age 53, unknown 20.0
1830 Male, age 51, unknown 19.3
2828 Female, age 72, unknown 18.6
2586 Male, age 75, left hemisphere 18.3
2666 Male, age 74, left hemisphere 17.2
Dorsal raphe nucleus
nTPM: 21.3
2298 Female, age 72, unknown 23.3
2047 Male, age 72, unknown 21.0
1828 Male, age 53, unknown 20.9
2750 Male, age 76, both hemispheres 20.8
2016 Female, age 72, unknown 20.6
Inferior colliculus
nTPM: 22.0
2097 Female, age 72, unknown 23.0
1890 Male, age 53, unknown 21.8
2849 Male, age 72, unknown 21.6
1848 Female, age 42, unknown 21.4
Median raphe nucleus
nTPM: 22.0
2220 Male, age 76, midline 22.0
Pedunculopontine tegmental nucleus
nTPM: 21.8
2334 Male, age 80, both hemispheres 22.8
1921 Female, age 85, both hemispheres 22.5
2338 Male, age 61, both hemispheres 20.0
Periaquaductal grey, anterior
nTPM: 20.2
1947 Male, age 18, unknown 20.8
2502 Female, age 75, unknown 20.1
1795 Male, age 51, unknown 19.5
Periaquaductal grey, dorsal
nTPM: 21.1
2850 Male, age 76, both hemispheres 22.4
1840 Male, age 53, unknown 21.6
2464 Female, age 72, unknown 21.1
1831 Male, age 72, unknown 19.4
Periaquaductal grey, lateral
nTPM: 21.7
2272 Male, age 74, both hemispheres 22.9
2053 Male, age 18, unknown 21.2
2140 Male, age 76, both hemispheres 21.0
Pretectal area
nTPM: 20.5
2667 Female, age 75, unknown 23.9
2273 Male, age 74, both hemispheres 23.0
2224 Female, age 72, unknown 21.7
2825 Male, age 18, unknown 20.5
1817 Female, age 42, unknown 20.4
1944 Female, age 72, unknown 20.2
1815 Male, age 53, unknown 19.9
1816 Male, age 51, unknown 19.4
2316 Male, age 76, right hemisphere 19.3
2007 Male, age 72, unknown 19.2
2407 Male, age 75, both hemispheres 18.4
Red nucleus
nTPM: 19.3
1821 Female, age 72, unknown 21.9
1954 Female, age 42, unknown 21.3
1904 Male, age 53, unknown 20.3
2769 Male, age 72, unknown 19.9
2227 Male, age 72, unknown 19.7
1865 Male, age 51, unknown 19.5
2503 Female, age 72, unknown 19.3
2725 Female, age 75, unknown 19.1
2823 Male, age 76, right hemisphere 18.5
2785 Male, age 18, unknown 18.0
2584 Male, age 75, left hemisphere 17.7
2588 Male, age 74, left hemisphere 16.5
Substantia nigra
nTPM: 21.1
1916 Female, age 42, unknown 24.5
2241 Male, age 72, unknown 23.8
1851 Male, age 51, unknown 22.3
1889 Female, age 72, unknown 22.0
2409 Female, age 72, unknown 21.9
2699 Male, age 18, unknown 21.1
1941 Male, age 53, unknown 20.3
2590 Female, age 75, unknown 19.3
2583 Male, age 75, right hemisphere 17.8
2665 Male, age 74, both hemispheres 17.5
Superior colliculus
nTPM: 19.6
1895 Male, age 76, right hemisphere 22.4
2587 Male, age 74, left hemisphere 22.2
1839 Male, age 51, unknown 20.6
1796 Male, age 53, unknown 20.1
2261 Male, age 18, unknown 19.7
2087 Female, age 72, unknown 18.8
1913 Female, age 42, unknown 18.4
1995 Male, age 72, unknown 18.4
2668 Female, age 75, unknown 18.4
2664 Male, age 75, both hemispheres 17.2
Ventral tegmental area
nTPM: 21.9
2410 Female, age 72, unknown 23.8
2218 Male, age 76, both hemispheres 23.0
1915 Female, age 42, unknown 22.5
1942 Male, age 51, unknown 20.8
2223 Female, age 72, unknown 20.7
2021 Male, age 53, unknown 20.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 13.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 13.4
Samples: 139

Max nTPM: 26.5
Min nTPM: 4.2
Std nTPM: 4.7
Median nTPM: 13.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 26.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 25.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 24.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 24.2
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 23.4
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 21.9
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 21.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 21.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 20.8
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 20.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 20.7
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 26.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 26.2
FF:10158-103A5 76 years, female 26.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 11.0
Pig sample Sample description nTPM
Midbrain
nTPM: 10.3
Samples: 4

Max nTPM: 13.0
Min nTPM: 8.4
Sample A Female 13.0
Sample B Female 10.7
Sample C Male 9.1
Sample D Male 8.4
Periaqueductal gray
nTPM: 11.0
Samples: 3

Max nTPM: 11.4
Min nTPM: 10.4
Sample B Female 10.4
Sample C Male 11.4
Sample D Male 11.1
Substantia nigra
nTPM: 10.3
Samples: 4

Max nTPM: 12.5
Min nTPM: 8.4
Sample A Female 12.5
Sample B Female 9.9
Sample C Male 10.2
Sample D Male 8.4
Superior colliculi
nTPM: 11.0
Samples: 4

Max nTPM: 12.5
Min nTPM: 9.5
Sample A Female 11.5
Sample B Female 12.5
Sample C Male 10.4
Sample D Male 9.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 19.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 19.0
Samples: 4

Max nTPM: 20.4
Min nTPM: 16.5
Sample A Male 20.4
Sample B Male 18.7
Sample C Female 16.5
Sample D Female 20.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
68844134 Antisense, RP_050217_02_H12, Mouse strain C57BL/6J (56 days, male) 0.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.