BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:6.0 nTPM
HPA:6.0 nTPM
GTEx:6.9 nTPM
FANTOM5:6.8 Scaled Tags Per Million
Pig:2.1 nTPM
Mouse:2.4 nTPM
Allen mouse:1.9 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 6.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 5.0
2288 Male, age 75, left hemisphere 5.7
2290 Female, age 72, unknown 5.4
1781 Male, age 74, unknown 5.0
2481 Female, age 94, left hemisphere 5.0
1854 Male, age 80, left hemisphere 4.9
1857 Female, age 85, left hemisphere 4.7
2289 Male, age 61, right hemisphere 4.7
2846 Female, age 79, unknown 4.4
Claustrum
nTPM: 4.9
2196 Female, age 79, unknown 8.2
2292 Female, age 85, both hemispheres 5.1
2645 Female, age 72, unknown 4.9
2284 Female, age 91, both hemispheres 4.7
1956 Male, age 74, unknown 4.4
2491 Male, age 75, both hemispheres 4.3
2198 Male, age 80, both hemispheres 4.2
2568 Male, age 61, both hemispheres 4.2
2392 Female, age 94, both hemispheres 3.9
Globus pallidus, externus
nTPM: 5.1
2646 Male, age 61, right hemisphere 5.8
2567 Female, age 72, unknown 5.2
1996 Male, age 80, right hemisphere 5.0
2772 Female, age 79, unknown 4.8
2395 Male, age 75, both hemispheres 4.5
Globus pallidus, internus
nTPM: 5.1
2483 Female, age 94, right hemisphere 5.7
1818 Male, age 74, unknown 5.6
2037 Male, age 80, right hemisphere 5.2
2287 Male, age 75, right hemisphere 4.9
2566 Female, age 72, unknown 4.9
2778 Female, age 91, both hemispheres 4.8
2111 Female, age 85, right hemisphere 4.4
Nucleus accumbens
nTPM: 4.5
2286 Male, age 75, left hemisphere 5.3
1783 Male, age 74, unknown 5.0
2698 Female, age 72, unknown 4.7
1806 Female, age 85, left hemisphere 4.6
2732 Male, age 80, right hemisphere 4.2
1856 Female, age 91, right hemisphere 4.1
2391 Female, age 94, left hemisphere 4.1
2824 Male, age 61, right hemisphere 3.7
Nucleus basalis of Meynert
nTPM: 5.8
2569 Male, age 61, both hemispheres 6.4
2821 Male, age 75, both hemispheres 5.9
2484 Female, age 94, left hemisphere 5.7
2393 Male, age 80, right hemisphere 4.9
Nucleus of the diagonal band
nTPM: 6.0
2195 Female, age 85, both hemispheres 7.4
2775 Male, age 80, right hemisphere 6.8
2029 Male, age 61, right hemisphere 5.9
1812 Female, age 91, both hemispheres 5.6
1979 Male, age 74, unknown 4.3
Olfactory tubercle
nTPM: 5.1
1846 Male, age 80, right hemisphere 5.9
2487 Female, age 94, left hemisphere 5.2
1998 Female, age 91, both hemispheres 4.7
2856 Male, age 75, right hemisphere 4.6
Putamen
nTPM: 5.4
2489 Female, age 72, unknown 6.5
2647 Male, age 75, left hemisphere 6.4
2482 Female, age 94, left hemisphere 5.2
1829 Male, age 74, unknown 5.1
1838 Male, age 80, right hemisphere 5.1
2466 Female, age 79, unknown 4.8
1937 Female, age 91, right hemisphere 4.4
Septal nuclei
nTPM: 5.8
1960 Male, age 74, unknown 8.2
2031 Female, age 72, unknown 6.7
2059 Female, age 85, both hemispheres 5.8
2629 Female, age 94, right hemisphere 5.5
2009 Female, age 91, both hemispheres 5.4
2394 Male, age 61, left hemisphere 5.0
2199 Male, age 80, right hemisphere 4.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 6.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 5.3
Samples: 246

Max nTPM: 16.2
Min nTPM: 0.6
Std nTPM: 3.0
Median nTPM: 4.5
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 16.2
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 15.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 15.5
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 14.6
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 14.4
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 14.1
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 13.6
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 13.0
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 12.9
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 11.9
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 11.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 3.7
Samples: 246

Max nTPM: 21.9
Min nTPM: 0.9
Std nTPM: 2.8
Median nTPM: 2.9
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 21.9
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 20.3
GTEX-1EWIQ-0011-R6a-SM-ARU8G 70-79 years, female 16.0
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 14.2
GTEX-1IL2U-0011-R6a-SM-ARZLG 60-69 years, male 13.1
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 12.8
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 11.8
GTEX-S7PM-0011-R6A-SM-3NM8F 60-69 years, male 10.9
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 10.5
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 10.3
GTEX-13PL6-0011-R6a-SM-5O9C5 40-49 years, female 10.0
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Brain - Putamen (basal ganglia)
Average nTPM: 6.9
Samples: 205

Max nTPM: 26.0
Min nTPM: 1.1
Std nTPM: 4.0
Median nTPM: 5.6
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 26.0
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 24.5
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 20.5
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 19.6
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 17.3
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 16.4
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 16.4
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 15.3
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 14.8
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 14.6
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 14.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 6.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 5.2
FF:10164-103B2 76 years, female 5.2
Globus pallidus
Scaled Tags Per Million: 5.0
FF:10161-103A8 76 years, female 5.4
FF:10175-103C4 60 years, female 4.7
Nucleus accumbens
Scaled Tags Per Million: 6.8
FF:10037-101F1 23-56 years, mixed 6.8
Putamen
Scaled Tags Per Million: 3.7
FF:10176-103C5 60 years, female 3.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 2.1
Pig sample Sample description nTPM
Caudate
nTPM: 1.5
Samples: 4

Max nTPM: 1.7
Min nTPM: 1.2
Sample A Female 1.2
Sample B Female 1.3
Sample C Male 1.6
Sample D Male 1.7
Putamen
nTPM: 2.1
Samples: 4

Max nTPM: 2.5
Min nTPM: 1.8
Sample A Female 1.9
Sample B Female 1.8
Sample C Male 2.1
Sample D Male 2.5
Septum
nTPM: 1.5
Samples: 4

Max nTPM: 2.5
Min nTPM: 1.0
Sample A Female 1.5
Sample B Female 1.1
Sample C Male 2.5
Sample D Male 1.0
Ventral pallidum
nTPM: 1.4
Samples: 4

Max nTPM: 1.9
Min nTPM: 0.9
Sample A Female 0.9
Sample B Female 1.4
Sample C Male 1.9
Sample D Male 1.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 2.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 2.4
Samples: 4

Max nTPM: 2.8
Min nTPM: 2.0
Sample A Male 2.4
Sample B Male 2.2
Sample C Female 2.0
Sample D Female 2.8
Septum
nTPM: 1.9
Samples: 4

Max nTPM: 2.1
Min nTPM: 1.7
Sample A Male 2.1
Sample B Male 1.8
Sample C Female 2.1
Sample D Female 1.7
Ventral forebrain
nTPM: 2.5
Samples: 4

Max nTPM: 2.9
Min nTPM: 1.9
Sample A Male 2.8
Sample B Male 2.2
Sample C Female 2.9
Sample D Female 1.9

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.9
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.9
72472440 Antisense, RP_051005_03_E02, Mouse strain C57BL/6J (56 days, male) 1.9
Pallidum
Expression energy: 1.1
72472440 Antisense, RP_051005_03_E02, Mouse strain C57BL/6J (56 days, male) 1.1

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