We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
MTCH1
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • MTCH1
BRAIN HIPPOCAMPAL FORMATION Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Hippocampal formation
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glial cells: Low
Neuronal cells: High
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:326.1 nTPM
HPA:326.1 nTPM
GTEx:240.1 nTPM
FANTOM5:133.9 Scaled Tags Per Million
Pig:217.4 nTPM
Mouse:496.4 nTPM
Allen mouse:24.2 Expression energy

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA015971
Glial cells Low
Neuronal cells High



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 326.1
Sample id Sample description nTPM
Hippocampus
nTPM: 280.9
1898 Male, age 80, left hemisphere 337.9
2529 Female, age 94, left hemisphere 276.8
1855 Male, age 76, left hemisphere 274.9
2621 Female, age 67, right hemisphere 272.1
2148 Female, age 91, left hemisphere 265.9
1911 Female, age 85, right hemisphere 257.8
Dentate gyrus
nTPM: 283.7
1927 Female, age 91, both hemispheres 305.9
2010 Male, age 76, both hemispheres 302.2
2530 Female, age 94, left hemisphere 290.1
2528 Male, age 74, both hemispheres 272.3
2246 Female, age 85, both hemispheres 267.1
2531 Female, age 67, both hemispheres 264.8
Entorhinal gyrus
nTPM: 301.5
2764 Male, age 80, right hemisphere 352.1
1938 Female, age 85, left hemisphere 318.7
1787 Male, age 76, left hemisphere 302.8
2613 Female, age 94, left hemisphere 297.8
2686 Male, age 75, right hemisphere 272.1
2117 Female, age 91, right hemisphere 265.6
Hippocampus, CA1
nTPM: 305.4
2749 Male, age 80, left hemisphere 410.1
1873 Female, age 85, both hemispheres 298.9
2045 Male, age 76, both hemispheres 285.2
2527 Male, age 74, both hemispheres 269.3
2082 Female, age 91, right hemisphere 263.5
Hippocampus, CA2
nTPM: 294.0
1963 Male, age 80, left hemisphere 351.1
1892 Male, age 76, both hemispheres 330.4
2437 Female, age 94, left hemisphere 276.7
1940 Female, age 85, left hemisphere 272.5
2249 Male, age 74, both hemispheres 270.6
2113 Female, age 91, right hemisphere 262.7
Hippocampus, CA3
nTPM: 292.2
2137 Male, age 80, left hemisphere 338.7
1867 Male, age 76, both hemispheres 300.0
2620 Female, age 94, left hemisphere 298.4
1891 Female, age 85, both hemispheres 277.3
2436 Male, age 74, both hemispheres 272.2
2861 Female, age 67, both hemispheres 266.8
Parahippocampal cortex
nTPM: 284.7
1850 Male, age 80, both hemispheres 346.3
1933 Female, age 85, both hemispheres 305.1
1990 Female, age 91, right hemisphere 297.9
2532 Female, age 72, left hemisphere 285.4
2018 Male, age 76, both hemispheres 279.5
2250 Female, age 67, right hemisphere 271.5
2693 Female, age 94, both hemispheres 271.3
2692 Male, age 74, both hemispheres 268.3
2245 Female, age 91, both hemispheres 266.3
2622 Female, age 67, right hemisphere 255.6
Perirhinal gyrus
nTPM: 326.1
1794 Male, age 80, right hemisphere 362.3
1847 Female, age 91, left hemisphere 355.6
1841 Female, age 85, right hemisphere 318.4
2848 Male, age 76, right hemisphere 305.7
2521 Female, age 94, right hemisphere 288.6
Subiculum
nTPM: 278.2
1901 Male, age 80, both hemispheres 315.3
1977 Female, age 85, both hemispheres 306.2
2042 Male, age 76, both hemispheres 270.2
2619 Male, age 74, both hemispheres 267.3
2438 Female, age 94, left hemisphere 257.4
2729 Female, age 91, right hemisphere 252.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 240.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 240.1
Samples: 197

Max nTPM: 450.1
Min nTPM: 127.4
Std nTPM: 68.7
Median nTPM: 226.0
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 450.1
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 418.4
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 417.3
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 397.8
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 385.9
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 384.5
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 384.3
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 379.6
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 367.4
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 365.4
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 365.3
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 365.0
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 355.9
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 353.9
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 348.4
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 348.1
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 347.7
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 346.7
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 342.2
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 341.9
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 339.7
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 335.3
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 331.2
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 327.6
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 325.9
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 324.2
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 323.9
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 323.3
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 322.6
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 322.2
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 321.5
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 321.4
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 320.2
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 318.5
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 315.3
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 315.0
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 310.6
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 309.9
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 308.3
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 308.0
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 307.7
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 304.3
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 300.4
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 299.0
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 295.5
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 294.6
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 291.7
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 289.7
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 289.3
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 288.4
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 286.3
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 285.8
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 285.7
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 285.0
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 283.2
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 280.1
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 278.7
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 277.9
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 275.5
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 273.6
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 271.5
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 271.3
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 263.6
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 263.3
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 262.1
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 262.0
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 261.3
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 256.5
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 256.2
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 256.2
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 255.8
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 255.3
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 255.0
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 251.2
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 251.0
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 250.6
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 249.7
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 248.4
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 246.5
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 243.7
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 242.9
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 242.4
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 241.0
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 240.6
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 240.1
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 239.8
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 238.7
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 238.3
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 238.0
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 236.7
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 232.5
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 231.6
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 229.5
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 229.3
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 228.9
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 228.9
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 228.7
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 226.4
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 226.0
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 225.6
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 224.7
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 224.3
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 223.7
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 223.1
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 222.6
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 222.3
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 221.2
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 220.2
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 220.0
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 219.1
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 218.5
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 214.3
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 214.1
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 213.5
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 212.4
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 212.1
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 211.5
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 209.5
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 208.6
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 205.6
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 205.1
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 204.1
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 203.6
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 203.5
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 202.6
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 201.3
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 200.8
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 200.4
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 200.3
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 199.6
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 197.6
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 197.1
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 196.4
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 195.5
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 193.5
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 192.5
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 192.3
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 192.1
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 191.6
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 191.4
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 191.1
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 191.0
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 190.8
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 189.2
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 188.5
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 186.8
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 186.2
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 186.0
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 185.7
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 184.1
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 183.5
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 183.4
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 183.2
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 183.1
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 182.6
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 182.1
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 181.7
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 180.7
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 180.6
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 180.0
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 179.3
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 177.6
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 177.0
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 175.9
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 175.4
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 174.9
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 174.9
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 174.6
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 173.3
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 172.8
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 171.6
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 170.6
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 166.1
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 164.8
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 161.8
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 159.6
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 158.7
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 156.2
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 155.2
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 153.9
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 152.7
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 150.2
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 150.1
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 146.8
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 145.5
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 145.2
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 145.0
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 145.0
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 144.4
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 144.0
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 141.5
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 140.8
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 140.6
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 140.0
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 137.7
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 136.9
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 127.4
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 133.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 133.9
FF:10169-103B7 60 years, female 181.0
FF:10153-102I9 76 years, female 86.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 217.4
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 217.4
Samples: 4

Max nTPM: 308.4
Min nTPM: 141.3
Sample A Female 308.4
Sample B Female 248.2
Sample C Male 171.8
Sample D Male 141.3
Entorhinal cortex
nTPM: 169.2
Samples: 4

Max nTPM: 193.9
Min nTPM: 146.4
Sample A Female 193.9
Sample B Female 156.7
Sample C Male 179.6
Sample D Male 146.4
Subiculum
nTPM: 166.8
Samples: 4

Max nTPM: 205.4
Min nTPM: 144.1
Sample A Female 205.4
Sample B Female 155.1
Sample C Male 162.7
Sample D Male 144.1
Ventral hippocampus
nTPM: 199.5
Samples: 4

Max nTPM: 233.0
Min nTPM: 126.1
Sample A Female 217.9
Sample B Female 126.1
Sample C Male 220.9
Sample D Male 233.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 496.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 423.0
Samples: 4

Max nTPM: 486.5
Min nTPM: 364.3
Sample A Male 364.3
Sample B Male 400.3
Sample C Female 441.0
Sample D Female 486.5
Hippocampal formation
nTPM: 496.4
Samples: 4

Max nTPM: 530.8
Min nTPM: 461.1
Sample A Male 496.1
Sample B Male 461.1
Sample C Female 530.8
Sample D Female 497.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 24.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 24.2
67764936 Antisense, RP_040916_02_F04, Mouse strain C57BL/6J (56 days, male) 24.2

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.