BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:1.0 nTPM
HPA:1.0 nTPM
GTEx:1.5 nTPM
FANTOM5:1.0 Scaled Tags Per Million

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 1.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 0.9
2481 Female, age 94, left hemisphere 1.1
2288 Male, age 75, left hemisphere 1.0
1781 Male, age 74, unknown 0.9
2290 Female, age 72, unknown 0.9
2846 Female, age 79, unknown 0.9
1854 Male, age 80, left hemisphere 0.8
1857 Female, age 85, left hemisphere 0.8
2289 Male, age 61, right hemisphere 0.8
Claustrum
nTPM: 0.7
2196 Female, age 79, unknown 0.8
2392 Female, age 94, both hemispheres 0.8
2645 Female, age 72, unknown 0.8
1956 Male, age 74, unknown 0.7
2198 Male, age 80, both hemispheres 0.7
2284 Female, age 91, both hemispheres 0.7
2292 Female, age 85, both hemispheres 0.7
2491 Male, age 75, both hemispheres 0.7
2568 Male, age 61, both hemispheres 0.7
Globus pallidus, externus
nTPM: 0.7
2395 Male, age 75, both hemispheres 0.8
2646 Male, age 61, right hemisphere 0.8
1996 Male, age 80, right hemisphere 0.7
2567 Female, age 72, unknown 0.7
2772 Female, age 79, unknown 0.7
Globus pallidus, internus
nTPM: 0.9
2483 Female, age 94, right hemisphere 1.0
2778 Female, age 91, both hemispheres 1.0
1818 Male, age 74, unknown 0.9
2037 Male, age 80, right hemisphere 0.9
2111 Female, age 85, right hemisphere 0.9
2287 Male, age 75, right hemisphere 0.8
2566 Female, age 72, unknown 0.8
Nucleus accumbens
nTPM: 0.8
1783 Male, age 74, unknown 0.9
2286 Male, age 75, left hemisphere 0.9
2391 Female, age 94, left hemisphere 0.9
2732 Male, age 80, right hemisphere 0.9
2824 Male, age 61, right hemisphere 0.9
1856 Female, age 91, right hemisphere 0.8
2698 Female, age 72, unknown 0.8
1806 Female, age 85, left hemisphere 0.7
Nucleus basalis of Meynert
nTPM: 0.8
2393 Male, age 80, right hemisphere 0.8
2484 Female, age 94, left hemisphere 0.8
2569 Male, age 61, both hemispheres 0.8
2821 Male, age 75, both hemispheres 0.8
Nucleus of the diagonal band
nTPM: 0.8
1812 Female, age 91, both hemispheres 0.8
1979 Male, age 74, unknown 0.8
2029 Male, age 61, right hemisphere 0.8
2775 Male, age 80, right hemisphere 0.8
2195 Female, age 85, both hemispheres 0.7
Olfactory tubercle
nTPM: 0.8
2487 Female, age 94, left hemisphere 0.8
2856 Male, age 75, right hemisphere 0.8
1846 Male, age 80, right hemisphere 0.7
1998 Female, age 91, both hemispheres 0.7
Putamen
nTPM: 1.0
2482 Female, age 94, left hemisphere 1.4
2489 Female, age 72, unknown 1.0
2647 Male, age 75, left hemisphere 1.0
1829 Male, age 74, unknown 0.9
2466 Female, age 79, unknown 0.9
1838 Male, age 80, right hemisphere 0.8
1937 Female, age 91, right hemisphere 0.8
Septal nuclei
nTPM: 0.8
2031 Female, age 72, unknown 0.9
1960 Male, age 74, unknown 0.8
2059 Female, age 85, both hemispheres 0.8
2199 Male, age 80, right hemisphere 0.8
2629 Female, age 94, right hemisphere 0.8
2009 Female, age 91, both hemispheres 0.7
2394 Male, age 61, left hemisphere 0.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 1.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 1.5
Samples: 246

Max nTPM: 29.9
Min nTPM: 0.0
Std nTPM: 2.9
Median nTPM: 0.8
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 29.9
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 23.1
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 18.6
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 15.0
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 11.2
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 8.7
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 6.4
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 6.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 5.8
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 4.4
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 4.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 0.9
Samples: 246

Max nTPM: 14.6
Min nTPM: 0.0
Std nTPM: 1.2
Median nTPM: 0.5
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 14.6
GTEX-1H1CY-0011-R6b-SM-CE6RP 60-69 years, female 8.3
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 6.5
GTEX-13JUV-0011-R6b-SM-5LZYG 40-49 years, female 5.0
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 3.7
GTEX-13QJC-0011-R6a-SM-5S2VI 60-69 years, female 3.2
GTEX-XMD1-0011-R6A-SM-4AT5K 60-69 years, male 3.1
GTEX-1EH9U-0011-R6a-SM-CJI2C 60-69 years, male 3.1
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 2.9
GTEX-OHPN-0011-R6A-SM-2I5FH 60-69 years, female 2.8
GTEX-1GTWX-0011-R6a-SM-A96RN 60-69 years, male 2.6
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Brain - Putamen (basal ganglia)
Average nTPM: 1.4
Samples: 205

Max nTPM: 27.8
Min nTPM: 0.0
Std nTPM: 2.4
Median nTPM: 0.8
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 27.8
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 15.6
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 10.0
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 7.9
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 7.5
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 6.7
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 4.8
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 4.0
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 3.4
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 3.4
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 3.4
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 1.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 1.0
FF:10164-103B2 76 years, female 1.0
Globus pallidus
Scaled Tags Per Million: 0.1
FF:10161-103A8 76 years, female 0.3
FF:10175-103C4 60 years, female 0.0
Nucleus accumbens
Scaled Tags Per Million: 0.6
FF:10037-101F1 23-56 years, mixed 0.6
Putamen
Scaled Tags Per Million: 0.0
FF:10176-103C5 60 years, female 0.0

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The Human Protein Atlas

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