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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:81.1 nTPM
HPA:81.1 nTPM
GTEx:45.3 nTPM
FANTOM5:117.3 Scaled Tags Per Million
Pig:15.2 nTPM
Mouse:6.7 nTPM
Allen mouse:0.1 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 81.1
Sample id Sample description nTPM
Amygdala
nTPM: 81.1
2695 Female, age 67, right hemisphere 85.4
2514 Male, age 75, right hemisphere 83.5
2814 Male, age 76, right hemisphere 82.1
1987 Female, age 91, left hemisphere 80.8
2517 Female, age 94, left hemisphere 73.5
Basal amygdala
nTPM: 74.2
2609 Male, age 75, right hemisphere 88.4
1955 Male, age 76, both hemispheres 76.7
2243 Female, age 91, right hemisphere 72.6
2110 Male, age 80, left hemisphere 71.8
2685 Female, age 94, left hemisphere 68.9
2827 Female, age 67, right hemisphere 66.6
Central amygdala
nTPM: 76.0
2515 Male, age 75, right hemisphere 81.8
1905 Male, age 76, both hemispheres 79.7
2826 Female, age 94, left hemisphere 73.2
2239 Male, age 80, left hemisphere 72.8
2701 Female, age 91, right hemisphere 72.7
Corticomedial amygdala
nTPM: 74.4
2428 Male, age 75, right hemisphere 85.3
2240 Male, age 76, both hemispheres 74.7
2829 Male, age 80, left hemisphere 74.2
2242 Female, age 91, right hemisphere 73.7
2429 Female, age 94, left hemisphere 71.5
2535 Female, age 67, right hemisphere 66.9
Lateral amygdala
nTPM: 73.1
2516 Male, age 75, right hemisphere 79.9
1883 Male, age 76, both hemispheres 79.1
2256 Male, age 80, left hemisphere 72.1
2255 Female, age 91, right hemisphere 70.1
2534 Female, age 94, left hemisphere 69.8
2830 Female, age 67, right hemisphere 67.7
Stria terminalis, bed nucleus
nTPM: 69.5
1974 Female, age 91, both hemispheres 70.5
2201 Male, age 74, unknown 69.4
2486 Female, age 94, both hemispheres 68.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 45.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 45.3
Samples: 152

Max nTPM: 97.5
Min nTPM: 17.8
Std nTPM: 16.5
Median nTPM: 41.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 97.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 95.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 95.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 94.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 82.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 82.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 82.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 77.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 76.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 74.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 71.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 71.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 71.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 71.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 70.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 69.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 68.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 67.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 66.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 66.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 65.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 64.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 63.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 63.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 61.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 61.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 60.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 60.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 55.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 55.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 55.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 54.7
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 54.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 53.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 53.8
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 53.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 53.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 53.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 53.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 53.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 52.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 52.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 52.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 51.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 51.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 51.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 51.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 50.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 49.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 49.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 49.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 48.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 48.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 47.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 47.5
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 47.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 46.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 46.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 46.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 46.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 45.4
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 45.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 44.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 44.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 44.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 44.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 44.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 43.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 43.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 43.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 43.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 43.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 43.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 42.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 42.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 41.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 41.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 41.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 41.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 41.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 41.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 41.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 40.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 40.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 40.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 40.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 40.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 39.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 39.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 39.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 38.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 38.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 38.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 37.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 37.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 36.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 36.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 36.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 36.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 36.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 35.6
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 35.5
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 35.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 35.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 35.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 35.0
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 34.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 34.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 34.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 34.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 34.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 34.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 33.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 33.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 33.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 33.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 32.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 32.6
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 32.4
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 32.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 32.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 32.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 31.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 31.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 31.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 30.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 30.6
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 30.6
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 30.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 30.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 29.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 29.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 29.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 28.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 28.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 28.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 28.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 27.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 27.6
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 27.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 27.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 26.3
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 25.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 22.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 22.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 22.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 20.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 20.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 19.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 19.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 18.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 17.8
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 117.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 117.3
FF:10151-102I7 76 years, female 117.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 15.2
Pig sample Sample description nTPM
Amygdala
nTPM: 15.2
Samples: 4

Max nTPM: 19.4
Min nTPM: 13.3
Sample A Female 19.4
Sample B Female 14.8
Sample C Male 13.3
Sample D Male 13.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 6.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 6.7
Samples: 4

Max nTPM: 7.6
Min nTPM: 5.7
Sample A Male 7.6
Sample B Male 6.6
Sample C Female 5.7
Sample D Female 6.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.1
74819671 Antisense, RP_060315_02_G10, Mouse strain C57BL/6J (56 days, male) 0.1
69014518 Antisense, RP_050310_01_C05, Mouse strain C57BL/6J (56 days, male) 0.0

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