MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:38.6 nTPM
HPA:38.6 nTPM
GTEx:42.8 nTPM
FANTOM5:50.8 Scaled Tags Per Million
Pig:7.9 nTPM
Mouse:33.8 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 38.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 36.7
2586 Male, age 75, left hemisphere 42.7
2019 Male, age 18, unknown 38.1
2828 Female, age 72, unknown 37.9
2411 Female, age 72, unknown 37.4
1827 Male, age 72, unknown 37.2
1870 Female, age 42, unknown 36.4
2666 Male, age 74, left hemisphere 35.9
1830 Male, age 51, unknown 35.3
1833 Male, age 53, unknown 34.2
2219 Male, age 76, both hemispheres 31.9
Dorsal raphe nucleus
nTPM: 36.2
2750 Male, age 76, both hemispheres 37.6
2047 Male, age 72, unknown 37.5
2298 Female, age 72, unknown 36.3
2016 Female, age 72, unknown 35.6
1828 Male, age 53, unknown 33.7
Inferior colliculus
nTPM: 34.3
1890 Male, age 53, unknown 35.4
1848 Female, age 42, unknown 34.2
2097 Female, age 72, unknown 34.2
2849 Male, age 72, unknown 33.2
Median raphe nucleus
nTPM: 36.8
2220 Male, age 76, midline 36.8
Pedunculopontine tegmental nucleus
nTPM: 32.9
1921 Female, age 85, both hemispheres 34.1
2334 Male, age 80, both hemispheres 33.8
2338 Male, age 61, both hemispheres 30.9
Periaquaductal grey, anterior
nTPM: 34.9
2502 Female, age 75, unknown 36.9
1795 Male, age 51, unknown 34.7
1947 Male, age 18, unknown 33.2
Periaquaductal grey, dorsal
nTPM: 34.4
2464 Female, age 72, unknown 35.5
2850 Male, age 76, both hemispheres 34.3
1831 Male, age 72, unknown 34.0
1840 Male, age 53, unknown 33.9
Periaquaductal grey, lateral
nTPM: 33.0
2053 Male, age 18, unknown 35.0
2140 Male, age 76, both hemispheres 33.2
2272 Male, age 74, both hemispheres 30.7
Pretectal area
nTPM: 36.4
1816 Male, age 51, unknown 39.9
2007 Male, age 72, unknown 39.0
1815 Male, age 53, unknown 38.8
1817 Female, age 42, unknown 38.7
2667 Female, age 75, unknown 37.9
1944 Female, age 72, unknown 36.4
2316 Male, age 76, right hemisphere 35.5
2825 Male, age 18, unknown 34.7
2273 Male, age 74, both hemispheres 33.5
2224 Female, age 72, unknown 33.2
2407 Male, age 75, both hemispheres 33.0
Red nucleus
nTPM: 38.6
2503 Female, age 72, unknown 41.8
2769 Male, age 72, unknown 40.0
1821 Female, age 72, unknown 39.7
2588 Male, age 74, left hemisphere 39.7
2785 Male, age 18, unknown 38.9
1904 Male, age 53, unknown 38.4
1865 Male, age 51, unknown 38.2
2227 Male, age 72, unknown 37.8
2584 Male, age 75, left hemisphere 37.3
1954 Female, age 42, unknown 37.2
2823 Male, age 76, right hemisphere 36.9
2725 Female, age 75, unknown 36.7
Substantia nigra
nTPM: 33.7
1889 Female, age 72, unknown 37.6
2583 Male, age 75, right hemisphere 36.1
1916 Female, age 42, unknown 34.9
1851 Male, age 51, unknown 34.8
2665 Male, age 74, both hemispheres 34.2
1941 Male, age 53, unknown 33.6
2699 Male, age 18, unknown 33.3
2590 Female, age 75, unknown 33.1
2409 Female, age 72, unknown 30.8
2241 Male, age 72, unknown 28.8
Superior colliculus
nTPM: 36.1
1995 Male, age 72, unknown 38.7
1796 Male, age 53, unknown 37.7
1913 Female, age 42, unknown 37.7
2664 Male, age 75, both hemispheres 35.9
2261 Male, age 18, unknown 35.8
1895 Male, age 76, right hemisphere 35.6
2587 Male, age 74, left hemisphere 35.6
2087 Female, age 72, unknown 35.4
2668 Female, age 75, unknown 34.8
1839 Male, age 51, unknown 34.2
Ventral tegmental area
nTPM: 34.4
2410 Female, age 72, unknown 35.7
2223 Female, age 72, unknown 35.6
1915 Female, age 42, unknown 34.8
2021 Male, age 53, unknown 34.8
1942 Male, age 51, unknown 33.4
2218 Male, age 76, both hemispheres 32.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 42.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 42.8
Samples: 139

Max nTPM: 64.4
Min nTPM: 27.2
Std nTPM: 7.5
Median nTPM: 42.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 64.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 63.8
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 62.2
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 60.2
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 58.7
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 57.8
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 57.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 56.8
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 55.6
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 55.1
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 54.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 50.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 50.8
FF:10158-103A5 76 years, female 50.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 7.9
Pig sample Sample description nTPM
Midbrain
nTPM: 7.9
Samples: 4

Max nTPM: 8.5
Min nTPM: 6.9
Sample A Female 8.2
Sample B Female 6.9
Sample C Male 8.5
Sample D Male 7.9
Periaqueductal gray
nTPM: 7.6
Samples: 3

Max nTPM: 9.0
Min nTPM: 6.2
Sample B Female 7.6
Sample C Male 9.0
Sample D Male 6.2
Substantia nigra
nTPM: 6.8
Samples: 4

Max nTPM: 7.9
Min nTPM: 6.0
Sample A Female 6.4
Sample B Female 6.0
Sample C Male 7.9
Sample D Male 6.7
Superior colliculi
nTPM: 6.4
Samples: 4

Max nTPM: 6.8
Min nTPM: 5.8
Sample A Female 6.5
Sample B Female 5.8
Sample C Male 6.4
Sample D Male 6.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 33.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 33.8
Samples: 4

Max nTPM: 37.9
Min nTPM: 31.3
Sample A Male 31.3
Sample B Male 31.7
Sample C Female 34.3
Sample D Female 37.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
71492808 Antisense, RP_050913_01_E12, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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