BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:44.9 nTPM
HPA:44.9 nTPM
GTEx:35.7 nTPM
FANTOM5:30.2 Scaled Tags Per Million
Mouse:60.0 nTPM
Allen mouse:0.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA026585Antibody HPA027167
Glial cells Not detectedNot detected
Neuronal cells LowLow





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 44.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 40.3
2846 Female, age 79, unknown 42.5
1854 Male, age 80, left hemisphere 41.2
2290 Female, age 72, unknown 41.2
2288 Male, age 75, left hemisphere 41.0
2481 Female, age 94, left hemisphere 40.6
1857 Female, age 85, left hemisphere 39.2
1781 Male, age 74, unknown 39.1
2289 Male, age 61, right hemisphere 37.2
Claustrum
nTPM: 40.3
2196 Female, age 79, unknown 42.9
2198 Male, age 80, both hemispheres 42.3
2491 Male, age 75, both hemispheres 41.9
2392 Female, age 94, both hemispheres 41.7
1956 Male, age 74, unknown 41.4
2292 Female, age 85, both hemispheres 39.6
2568 Male, age 61, both hemispheres 38.7
2284 Female, age 91, both hemispheres 37.3
2645 Female, age 72, unknown 36.9
Globus pallidus, externus
nTPM: 44.5
2395 Male, age 75, both hemispheres 47.9
2772 Female, age 79, unknown 46.9
1996 Male, age 80, right hemisphere 44.3
2646 Male, age 61, right hemisphere 42.0
2567 Female, age 72, unknown 41.4
Globus pallidus, internus
nTPM: 44.9
2287 Male, age 75, right hemisphere 49.5
2483 Female, age 94, right hemisphere 48.6
2778 Female, age 91, both hemispheres 47.5
2037 Male, age 80, right hemisphere 43.3
1818 Male, age 74, unknown 42.6
2111 Female, age 85, right hemisphere 42.1
2566 Female, age 72, unknown 41.0
Nucleus accumbens
nTPM: 41.1
2391 Female, age 94, left hemisphere 42.6
2698 Female, age 72, unknown 42.3
2286 Male, age 75, left hemisphere 41.6
2824 Male, age 61, right hemisphere 41.0
1806 Female, age 85, left hemisphere 40.9
1856 Female, age 91, right hemisphere 40.8
1783 Male, age 74, unknown 39.9
2732 Male, age 80, right hemisphere 39.7
Nucleus basalis of Meynert
nTPM: 42.2
2569 Male, age 61, both hemispheres 43.0
2821 Male, age 75, both hemispheres 42.9
2393 Male, age 80, right hemisphere 42.4
2484 Female, age 94, left hemisphere 40.5
Nucleus of the diagonal band
nTPM: 41.1
1812 Female, age 91, both hemispheres 43.1
2775 Male, age 80, right hemisphere 43.0
2029 Male, age 61, right hemisphere 41.2
1979 Male, age 74, unknown 39.6
2195 Female, age 85, both hemispheres 38.6
Olfactory tubercle
nTPM: 39.4
1846 Male, age 80, right hemisphere 42.5
2856 Male, age 75, right hemisphere 39.0
1998 Female, age 91, both hemispheres 38.6
2487 Female, age 94, left hemisphere 37.5
Putamen
nTPM: 40.9
2647 Male, age 75, left hemisphere 42.8
2466 Female, age 79, unknown 41.8
2482 Female, age 94, left hemisphere 41.5
1829 Male, age 74, unknown 40.9
1838 Male, age 80, right hemisphere 40.8
1937 Female, age 91, right hemisphere 39.8
2489 Female, age 72, unknown 38.7
Septal nuclei
nTPM: 39.7
2031 Female, age 72, unknown 42.0
1960 Male, age 74, unknown 40.5
2009 Female, age 91, both hemispheres 40.1
2394 Male, age 61, left hemisphere 39.6
2199 Male, age 80, right hemisphere 39.4
2629 Female, age 94, right hemisphere 39.2
2059 Female, age 85, both hemispheres 37.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 35.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 33.5
Samples: 246

Max nTPM: 59.5
Min nTPM: 20.0
Std nTPM: 6.0
Median nTPM: 32.2
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 59.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 56.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 55.6
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 51.8
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 51.4
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 51.1
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 50.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 49.2
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 48.4
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 47.2
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 46.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 34.4
Samples: 246

Max nTPM: 64.7
Min nTPM: 22.7
Std nTPM: 7.0
Median nTPM: 33.1
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 64.7
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 61.9
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 60.4
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 57.6
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 55.3
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 55.2
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 55.2
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 54.9
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 53.2
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 50.9
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 50.8
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Brain - Putamen (basal ganglia)
Average nTPM: 35.7
Samples: 205

Max nTPM: 72.2
Min nTPM: 24.3
Std nTPM: 6.7
Median nTPM: 34.2
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 72.2
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 60.8
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 57.9
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 57.5
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 54.2
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 51.6
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 51.6
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 50.7
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 48.4
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 48.4
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 48.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 30.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 28.3
FF:10164-103B2 76 years, female 28.3
Globus pallidus
Scaled Tags Per Million: 30.2
FF:10175-103C4 60 years, female 30.7
FF:10161-103A8 76 years, female 29.8
Nucleus accumbens
Scaled Tags Per Million: 27.0
FF:10037-101F1 23-56 years, mixed 27.0
Putamen
Scaled Tags Per Million: 29.9
FF:10176-103C5 60 years, female 29.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 60.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 49.5
Samples: 4

Max nTPM: 53.5
Min nTPM: 47.8
Sample A Male 47.8
Sample B Male 47.8
Sample C Female 53.5
Sample D Female 49.0
Septum
nTPM: 60.0
Samples: 4

Max nTPM: 66.5
Min nTPM: 54.2
Sample A Male 54.2
Sample B Male 66.5
Sample C Female 62.7
Sample D Female 56.6
Ventral forebrain
nTPM: 53.6
Samples: 4

Max nTPM: 55.4
Min nTPM: 51.9
Sample A Male 51.9
Sample B Male 53.9
Sample C Female 55.4
Sample D Female 53.1

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
80473485 Antisense, RP_070219_01_E11, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.0
80473485 Antisense, RP_070219_01_E11, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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