MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:43.6 nTPM
HPA:43.6 nTPM
GTEx:52.0 nTPM
FANTOM5:30.1 Scaled Tags Per Million
Mouse:64.4 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 43.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 41.8
2411 Female, age 72, unknown 44.6
1870 Female, age 42, unknown 43.8
2019 Male, age 18, unknown 42.4
1827 Male, age 72, unknown 42.0
2666 Male, age 74, left hemisphere 41.5
1833 Male, age 53, unknown 41.3
2586 Male, age 75, left hemisphere 41.3
1830 Male, age 51, unknown 41.0
2828 Female, age 72, unknown 40.6
2219 Male, age 76, both hemispheres 40.1
Dorsal raphe nucleus
nTPM: 42.3
2750 Male, age 76, both hemispheres 43.2
1828 Male, age 53, unknown 42.7
2047 Male, age 72, unknown 42.7
2298 Female, age 72, unknown 41.8
2016 Female, age 72, unknown 41.2
Inferior colliculus
nTPM: 42.3
1890 Male, age 53, unknown 44.6
2097 Female, age 72, unknown 43.8
1848 Female, age 42, unknown 41.1
2849 Male, age 72, unknown 39.8
Median raphe nucleus
nTPM: 41.8
2220 Male, age 76, midline 41.8
Pedunculopontine tegmental nucleus
nTPM: 41.3
1921 Female, age 85, both hemispheres 41.4
2338 Male, age 61, both hemispheres 41.3
2334 Male, age 80, both hemispheres 41.2
Periaquaductal grey, anterior
nTPM: 41.2
1947 Male, age 18, unknown 42.7
2502 Female, age 75, unknown 41.9
1795 Male, age 51, unknown 39.0
Periaquaductal grey, dorsal
nTPM: 40.6
2464 Female, age 72, unknown 42.2
2850 Male, age 76, both hemispheres 40.1
1840 Male, age 53, unknown 40.0
1831 Male, age 72, unknown 39.9
Periaquaductal grey, lateral
nTPM: 39.4
2053 Male, age 18, unknown 41.9
2140 Male, age 76, both hemispheres 38.3
2272 Male, age 74, both hemispheres 38.0
Pretectal area
nTPM: 41.3
1816 Male, age 51, unknown 43.6
2007 Male, age 72, unknown 42.3
1815 Male, age 53, unknown 42.1
1817 Female, age 42, unknown 42.0
2224 Female, age 72, unknown 41.6
2667 Female, age 75, unknown 41.5
2316 Male, age 76, right hemisphere 41.4
2825 Male, age 18, unknown 41.3
1944 Female, age 72, unknown 39.8
2407 Male, age 75, both hemispheres 39.5
2273 Male, age 74, both hemispheres 39.0
Red nucleus
nTPM: 43.6
1821 Female, age 72, unknown 47.3
2503 Female, age 72, unknown 45.8
1865 Male, age 51, unknown 45.1
1954 Female, age 42, unknown 44.3
2588 Male, age 74, left hemisphere 43.7
2823 Male, age 76, right hemisphere 43.5
1904 Male, age 53, unknown 43.2
2584 Male, age 75, left hemisphere 42.7
2725 Female, age 75, unknown 42.7
2769 Male, age 72, unknown 42.5
2227 Male, age 72, unknown 41.2
2785 Male, age 18, unknown 40.7
Substantia nigra
nTPM: 43.3
2241 Male, age 72, unknown 48.6
1889 Female, age 72, unknown 44.9
1851 Male, age 51, unknown 44.0
2665 Male, age 74, both hemispheres 43.9
2590 Female, age 75, unknown 43.0
1916 Female, age 42, unknown 42.5
2699 Male, age 18, unknown 42.3
1941 Male, age 53, unknown 42.1
2583 Male, age 75, right hemisphere 41.8
2409 Female, age 72, unknown 39.9
Superior colliculus
nTPM: 41.5
2587 Male, age 74, left hemisphere 44.3
1895 Male, age 76, right hemisphere 43.0
1913 Female, age 42, unknown 42.7
1995 Male, age 72, unknown 41.9
2668 Female, age 75, unknown 41.1
1796 Male, age 53, unknown 40.9
2087 Female, age 72, unknown 40.6
2664 Male, age 75, both hemispheres 40.5
1839 Male, age 51, unknown 40.4
2261 Male, age 18, unknown 39.7
Ventral tegmental area
nTPM: 41.7
2223 Female, age 72, unknown 43.5
1942 Male, age 51, unknown 41.7
2410 Female, age 72, unknown 41.7
1915 Female, age 42, unknown 41.2
2021 Male, age 53, unknown 41.1
2218 Male, age 76, both hemispheres 40.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 52.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 52.0
Samples: 139

Max nTPM: 85.0
Min nTPM: 35.9
Std nTPM: 11.1
Median nTPM: 49.5
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 85.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 84.4
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 84.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 83.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 81.6
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 81.5
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 80.8
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 75.6
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 73.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 71.1
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 70.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 30.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 30.1
FF:10158-103A5 76 years, female 30.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 64.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 64.4
Samples: 4

Max nTPM: 67.3
Min nTPM: 60.8
Sample A Male 60.8
Sample B Male 66.1
Sample C Female 63.2
Sample D Female 67.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
80473485 Antisense, RP_070219_01_E11, Mouse strain C57BL/6J (56 days, male) 0.1

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