COLON - Expression summary
Protein expression
Coloni
h
m
l
n
Endothelial cells: Not detected
Glandular cells: Low
Peripheral nerve/ganglion: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:9.7 nTPM
HPA:9.6 nTPM
GTEx:9.7 nTPM
FANTOM5:21.3 Scaled Tags Per Million

COLON - Antibody stainingi
Antibody HPA027148
Endothelial cells Not detected
Glandular cells Low
Peripheral nerve/ganglion Not detected


COLON - HPA RNA-seqi
Average nTPM 9.6
overview
Male, age 54 		Colon sample 67
nTPM: 7.2
Cell types%
Glandular cells:
65

Smooth muscle cells:
10

Other cell types:
25
overview
Female, age 57 		Colon sample 68
nTPM: 7
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55
overview
Male, age 80 		Colon sample 69
nTPM: 3
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40
overview
Male, age 68 		Colon sample 70
nTPM: 22.6
Cell types%
Glandular cells:
35

Smooth muscle cells:
10

Other cell types:
55
overview
Female, age 68 		Colon sample 76
nTPM: 15
Cell types%
Glandular cells:
25

Smooth muscle cells:
5

Other cell types:
70
overview
Female, age 61 		Colon sample 299
nTPM: 4.5
Cell types%
Glandular cells:
5

Smooth muscle cells:
65

Other cell types:
30
overview
Male, age 80 		Colon sample 300
nTPM: 12.2
Cell types%
Glandular cells:
15

Smooth muscle cells:
20

Other cell types:
65
overview
Female, age 78 		Colon sample 368
nTPM: 5.9
Cell types%
Glandular cells:
45

Smooth muscle cells:
5

Other cell types:
50
overview
Male, age 84 		Colon sample 381
nTPM: 19.4
Cell types%
Glandular cells:
50

Smooth muscle cells:
15

Other cell types:
35
overview
Male, age 80 		Colon sample 384
nTPM: 6.3
Cell types%
Glandular cells:
20

Smooth muscle cells:
35

Other cell types:
45
overview
Female, age 78 		Colon sample 389
nTPM: 7.1
Cell types%
Glandular cells:
35

Smooth muscle cells:
10

Other cell types:
55
overview
Female, age 69 		Colon sample 391
nTPM: 5.8
Cell types%
Glandular cells:
10

Smooth muscle cells:
45

Other cell types:
45
overview
Female, age 72 		Colon sample 403
nTPM: 8.9
Cell types%
Glandular cells:
20

Smooth muscle cells:
15

Other cell types:
65

COLON - GTEx RNA-seqi
Average nTPM 9.7
GTEx sample id Sample description nTPM
Colon - Sigmoid
Average nTPM: 9.7
Samples: 373

Max nTPM: 58.9
Min nTPM: 2.1
Std nTPM: 7.0
Median nTPM: 7.6
GTEX-1RQEC-2626-SM-EVR3Z 60-69 years, male 58.9
GTEX-13OW6-2226-SM-5N9FL 50-59 years, male 55.7
GTEX-15G19-2726-SM-6LPKG 60-69 years, male 51.2
GTEX-ZE9C-2126-SM-4WKGY 60-69 years, male 42.9
GTEX-1H3NZ-2526-SM-9KNVO 60-69 years, male 36.7
GTEX-18465-2726-SM-7LT9I 50-59 years, male 34.9
GTEX-147GR-2826-SM-5RQK8 60-69 years, male 31.7
GTEX-17HG3-1126-SM-7DUFC 30-39 years, female 30.6
GTEX-11ZU8-1126-SM-5EQ5K 60-69 years, male 30.1
GTEX-1EMGI-2626-SM-7IGNR 60-69 years, male 28.7
GTEX-13O1R-2426-SM-5KLZZ 60-69 years, male 27.9
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Colon - Transverse
Average nTPM: 7.2
Samples: 406

Max nTPM: 37.3
Min nTPM: 1.1
Std nTPM: 5.2
Median nTPM: 5.6
GTEX-1K9T9-2826-SM-D4P3F 50-59 years, female 37.3
GTEX-13OW6-2126-SM-5N9GL 50-59 years, male 30.7
GTEX-13QJ3-2626-SM-9OSXQ 50-59 years, male 25.7
GTEX-WVJS-2426-SM-EZ6LI 50-59 years, male 24.5
GTEX-17HII-2726-SM-7MGVM 50-59 years, male 23.1
GTEX-1EMGI-2726-SM-7P8S4 60-69 years, male 23.1
GTEX-SJXC-2226-SM-EVYAK 60-69 years, male 22.8
GTEX-1IDJD-2226-SM-A96TD 30-39 years, male 22.7
GTEX-144GL-2526-SM-5TDDL 50-59 years, male 22.5
GTEX-Z93S-2426-SM-5HL8N 50-59 years, male 20.7
GTEX-15DYW-2326-SM-6PAMU 60-69 years, female 20.5
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COLON - FANTOM5 CAGEi
Max Scaled Tags Per Million 21.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Colon
Scaled Tags Per Million: 21.3
FF:10014-101C5 62,83,84 years, mixed 21.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.