MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:19.3 nTPM
HPA:19.3 nTPM
GTEx:10.3 nTPM
FANTOM5:1.7 Scaled Tags Per Million
Pig:19.2 nTPM
Mouse:10.8 nTPM
Allen mouse:0.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 19.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 16.8
1870 Female, age 42, unknown 22.9
1827 Male, age 72, unknown 20.2
2411 Female, age 72, unknown 18.0
2666 Male, age 74, left hemisphere 16.5
2828 Female, age 72, unknown 16.2
1830 Male, age 51, unknown 16.0
2586 Male, age 75, left hemisphere 15.7
1833 Male, age 53, unknown 15.4
2219 Male, age 76, both hemispheres 15.3
2019 Male, age 18, unknown 11.4
Dorsal raphe nucleus
nTPM: 17.3
2298 Female, age 72, unknown 21.9
2750 Male, age 76, both hemispheres 16.5
2047 Male, age 72, unknown 16.3
1828 Male, age 53, unknown 15.9
2016 Female, age 72, unknown 15.9
Inferior colliculus
nTPM: 17.1
2849 Male, age 72, unknown 19.3
2097 Female, age 72, unknown 18.1
1848 Female, age 42, unknown 16.5
1890 Male, age 53, unknown 14.6
Median raphe nucleus
nTPM: 16.7
2220 Male, age 76, midline 16.7
Pedunculopontine tegmental nucleus
nTPM: 17.4
1921 Female, age 85, both hemispheres 19.1
2334 Male, age 80, both hemispheres 17.1
2338 Male, age 61, both hemispheres 16.0
Periaquaductal grey, anterior
nTPM: 18.8
1947 Male, age 18, unknown 20.3
1795 Male, age 51, unknown 20.2
2502 Female, age 75, unknown 16.0
Periaquaductal grey, dorsal
nTPM: 18.2
1840 Male, age 53, unknown 20.7
2850 Male, age 76, both hemispheres 19.0
1831 Male, age 72, unknown 17.0
2464 Female, age 72, unknown 16.1
Periaquaductal grey, lateral
nTPM: 19.3
2053 Male, age 18, unknown 23.8
2140 Male, age 76, both hemispheres 18.5
2272 Male, age 74, both hemispheres 15.7
Pretectal area
nTPM: 15.2
2825 Male, age 18, unknown 27.7
2224 Female, age 72, unknown 19.5
2273 Male, age 74, both hemispheres 15.5
2316 Male, age 76, right hemisphere 15.0
2407 Male, age 75, both hemispheres 14.1
2667 Female, age 75, unknown 13.7
1815 Male, age 53, unknown 13.3
2007 Male, age 72, unknown 12.6
1816 Male, age 51, unknown 12.1
1817 Female, age 42, unknown 11.7
1944 Female, age 72, unknown 11.7
Red nucleus
nTPM: 12.4
2584 Male, age 75, left hemisphere 15.5
2725 Female, age 75, unknown 13.4
2227 Male, age 72, unknown 12.8
2588 Male, age 74, left hemisphere 12.6
2769 Male, age 72, unknown 12.6
2503 Female, age 72, unknown 12.2
1821 Female, age 72, unknown 12.1
1954 Female, age 42, unknown 12.0
2823 Male, age 76, right hemisphere 11.5
1865 Male, age 51, unknown 11.4
1904 Male, age 53, unknown 11.4
2785 Male, age 18, unknown 11.4
Substantia nigra
nTPM: 14.0
1941 Male, age 53, unknown 15.2
2665 Male, age 74, both hemispheres 14.8
2241 Male, age 72, unknown 14.4
1889 Female, age 72, unknown 14.3
2590 Female, age 75, unknown 14.0
2409 Female, age 72, unknown 13.9
1851 Male, age 51, unknown 13.7
2583 Male, age 75, right hemisphere 13.5
1916 Female, age 42, unknown 13.2
2699 Male, age 18, unknown 13.0
Superior colliculus
nTPM: 14.6
1839 Male, age 51, unknown 18.5
1796 Male, age 53, unknown 17.6
2587 Male, age 74, left hemisphere 15.7
2261 Male, age 18, unknown 15.6
1895 Male, age 76, right hemisphere 14.3
2664 Male, age 75, both hemispheres 14.1
2668 Female, age 75, unknown 13.6
1913 Female, age 42, unknown 12.5
1995 Male, age 72, unknown 12.0
2087 Female, age 72, unknown 11.9
Ventral tegmental area
nTPM: 17.0
2223 Female, age 72, unknown 19.0
1942 Male, age 51, unknown 18.6
1915 Female, age 42, unknown 17.7
2021 Male, age 53, unknown 17.4
2218 Male, age 76, both hemispheres 16.0
2410 Female, age 72, unknown 13.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 10.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 10.3
Samples: 139

Max nTPM: 55.3
Min nTPM: 0.7
Std nTPM: 7.7
Median nTPM: 8.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 55.3
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 36.0
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 34.9
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 26.5
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 24.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 24.2
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 23.4
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 23.3
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 22.2
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 21.8
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 21.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 1.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1.7
FF:10158-103A5 76 years, female 1.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 19.2
Pig sample Sample description nTPM
Midbrain
nTPM: 5.1
Samples: 4

Max nTPM: 9.5
Min nTPM: 1.3
Sample A Female 1.3
Sample B Female 9.5
Sample C Male 4.2
Sample D Male 5.3
Periaqueductal gray
nTPM: 4.8
Samples: 3

Max nTPM: 7.1
Min nTPM: 3.3
Sample B Female 3.3
Sample C Male 7.1
Sample D Male 4.1
Substantia nigra
nTPM: 19.2
Samples: 4

Max nTPM: 37.6
Min nTPM: 1.8
Sample A Female 28.3
Sample B Female 9.2
Sample C Male 37.6
Sample D Male 1.8
Superior colliculi
nTPM: 16.7
Samples: 4

Max nTPM: 59.0
Min nTPM: 2.0
Sample A Female 3.3
Sample B Female 59.0
Sample C Male 2.0
Sample D Male 2.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 10.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 10.8
Samples: 4

Max nTPM: 15.0
Min nTPM: 6.8
Sample A Male 15.0
Sample B Male 12.4
Sample C Female 6.8
Sample D Female 9.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
71016583 Antisense, RP_050725_03_A02, Mouse strain C57BL/6J (56 days, male) 0.7
68632655 Antisense, RP_050125_02_A02, Mouse strain C57BL/6J (56 days, male) 0.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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