MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:58.3 nTPM
HPA:58.3 nTPM
GTEx:64.1 nTPM
FANTOM5:87.4 Scaled Tags Per Million
Pig:25.6 nTPM
Mouse:127.5 nTPM
Allen mouse:4.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 58.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 50.9
1827 Male, age 72, unknown 54.6
1870 Female, age 42, unknown 53.2
2219 Male, age 76, both hemispheres 53.0
2019 Male, age 18, unknown 51.6
2411 Female, age 72, unknown 51.6
1833 Male, age 53, unknown 51.5
2666 Male, age 74, left hemisphere 50.4
1830 Male, age 51, unknown 50.1
2828 Female, age 72, unknown 48.8
2586 Male, age 75, left hemisphere 44.2
Dorsal raphe nucleus
nTPM: 52.0
2750 Male, age 76, both hemispheres 53.9
2298 Female, age 72, unknown 53.7
1828 Male, age 53, unknown 51.7
2047 Male, age 72, unknown 50.4
2016 Female, age 72, unknown 50.3
Inferior colliculus
nTPM: 52.6
2849 Male, age 72, unknown 54.9
2097 Female, age 72, unknown 53.1
1848 Female, age 42, unknown 51.2
1890 Male, age 53, unknown 51.1
Median raphe nucleus
nTPM: 58.3
2220 Male, age 76, midline 58.3
Pedunculopontine tegmental nucleus
nTPM: 55.7
2338 Male, age 61, both hemispheres 56.3
2334 Male, age 80, both hemispheres 56.1
1921 Female, age 85, both hemispheres 54.6
Periaquaductal grey, anterior
nTPM: 51.1
1947 Male, age 18, unknown 51.9
1795 Male, age 51, unknown 51.4
2502 Female, age 75, unknown 50.1
Periaquaductal grey, dorsal
nTPM: 54.7
2850 Male, age 76, both hemispheres 59.4
1840 Male, age 53, unknown 54.3
1831 Male, age 72, unknown 52.8
2464 Female, age 72, unknown 52.3
Periaquaductal grey, lateral
nTPM: 53.3
2272 Male, age 74, both hemispheres 56.1
2140 Male, age 76, both hemispheres 52.8
2053 Male, age 18, unknown 51.0
Pretectal area
nTPM: 54.8
1944 Female, age 72, unknown 58.2
1816 Male, age 51, unknown 57.8
1817 Female, age 42, unknown 57.4
1815 Male, age 53, unknown 56.3
2007 Male, age 72, unknown 55.6
2273 Male, age 74, both hemispheres 55.4
2224 Female, age 72, unknown 54.9
2667 Female, age 75, unknown 53.8
2825 Male, age 18, unknown 52.5
2407 Male, age 75, both hemispheres 50.8
2316 Male, age 76, right hemisphere 50.4
Red nucleus
nTPM: 50.6
2725 Female, age 75, unknown 55.7
1821 Female, age 72, unknown 52.5
2823 Male, age 76, right hemisphere 52.5
1954 Female, age 42, unknown 51.3
2503 Female, age 72, unknown 51.3
2785 Male, age 18, unknown 50.4
2227 Male, age 72, unknown 49.5
1865 Male, age 51, unknown 49.1
1904 Male, age 53, unknown 48.9
2584 Male, age 75, left hemisphere 48.7
2769 Male, age 72, unknown 48.7
2588 Male, age 74, left hemisphere 48.6
Substantia nigra
nTPM: 51.9
1889 Female, age 72, unknown 55.2
1941 Male, age 53, unknown 55.2
2241 Male, age 72, unknown 53.9
1916 Female, age 42, unknown 53.7
2699 Male, age 18, unknown 52.9
1851 Male, age 51, unknown 51.0
2665 Male, age 74, both hemispheres 50.7
2409 Female, age 72, unknown 49.3
2590 Female, age 75, unknown 49.3
2583 Male, age 75, right hemisphere 47.4
Superior colliculus
nTPM: 51.6
2087 Female, age 72, unknown 53.9
1895 Male, age 76, right hemisphere 53.8
2261 Male, age 18, unknown 53.0
2587 Male, age 74, left hemisphere 52.4
1839 Male, age 51, unknown 51.6
1913 Female, age 42, unknown 51.2
2668 Female, age 75, unknown 51.0
1796 Male, age 53, unknown 50.8
2664 Male, age 75, both hemispheres 49.3
1995 Male, age 72, unknown 49.1
Ventral tegmental area
nTPM: 51.6
2218 Male, age 76, both hemispheres 54.8
1942 Male, age 51, unknown 51.6
1915 Female, age 42, unknown 51.5
2223 Female, age 72, unknown 50.8
2021 Male, age 53, unknown 50.6
2410 Female, age 72, unknown 50.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 64.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 64.1
Samples: 139

Max nTPM: 99.9
Min nTPM: 43.5
Std nTPM: 9.3
Median nTPM: 62.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 99.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 95.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 90.5
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 90.0
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 88.0
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 83.1
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 81.8
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 79.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 78.2
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 77.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 77.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 87.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 87.4
FF:10158-103A5 76 years, female 87.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 25.6
Pig sample Sample description nTPM
Midbrain
nTPM: 25.4
Samples: 4

Max nTPM: 26.9
Min nTPM: 23.7
Sample A Female 26.9
Sample B Female 25.7
Sample C Male 23.7
Sample D Male 25.3
Periaqueductal gray
nTPM: 25.6
Samples: 3

Max nTPM: 27.0
Min nTPM: 22.7
Sample B Female 22.7
Sample C Male 27.0
Sample D Male 27.0
Substantia nigra
nTPM: 24.3
Samples: 4

Max nTPM: 26.6
Min nTPM: 22.9
Sample A Female 24.6
Sample B Female 23.1
Sample C Male 26.6
Sample D Male 22.9
Superior colliculi
nTPM: 23.9
Samples: 4

Max nTPM: 25.0
Min nTPM: 21.2
Sample A Female 25.0
Sample B Female 21.2
Sample C Male 24.5
Sample D Male 24.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 127.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 127.5
Samples: 4

Max nTPM: 129.7
Min nTPM: 123.9
Sample A Male 123.9
Sample B Male 127.4
Sample C Female 129.7
Sample D Female 129.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.5
70429459 Antisense, RP_050614_01_F12, Mouse strain C57BL/6J (56 days, male) 5.1
75081397 Antisense, RP_060315_03_C08, Mouse strain C57BL/6J (56 days, male) 3.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.