BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: High
Neuronal cells: High
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:42.7 nTPM
HPA:42.7 nTPM
GTEx:48.4 nTPM
FANTOM5:126.7 Scaled Tags Per Million
Pig:33.5 nTPM
Mouse:98.4 nTPM
Allen mouse:10.3 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA035790
Glial cells High
Neuronal cells High



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 42.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 37.2
2846 Female, age 79, unknown 42.8
1857 Female, age 85, left hemisphere 38.8
2288 Male, age 75, left hemisphere 38.0
1854 Male, age 80, left hemisphere 37.6
2290 Female, age 72, unknown 37.4
2481 Female, age 94, left hemisphere 36.7
1781 Male, age 74, unknown 36.3
2289 Male, age 61, right hemisphere 29.9
Claustrum
nTPM: 36.2
2198 Male, age 80, both hemispheres 40.1
2392 Female, age 94, both hemispheres 39.6
1956 Male, age 74, unknown 38.6
2284 Female, age 91, both hemispheres 36.9
2196 Female, age 79, unknown 36.7
2491 Male, age 75, both hemispheres 36.2
2568 Male, age 61, both hemispheres 34.5
2645 Female, age 72, unknown 31.8
2292 Female, age 85, both hemispheres 31.4
Globus pallidus, externus
nTPM: 30.7
2395 Male, age 75, both hemispheres 40.0
2772 Female, age 79, unknown 35.9
1996 Male, age 80, right hemisphere 29.5
2646 Male, age 61, right hemisphere 24.3
2567 Female, age 72, unknown 23.9
Globus pallidus, internus
nTPM: 31.8
2287 Male, age 75, right hemisphere 38.7
2778 Female, age 91, both hemispheres 34.4
2483 Female, age 94, right hemisphere 31.8
2037 Male, age 80, right hemisphere 31.4
1818 Male, age 74, unknown 31.0
2566 Female, age 72, unknown 28.0
2111 Female, age 85, right hemisphere 27.2
Nucleus accumbens
nTPM: 37.0
1856 Female, age 91, right hemisphere 44.5
2698 Female, age 72, unknown 38.0
2391 Female, age 94, left hemisphere 37.9
1806 Female, age 85, left hemisphere 36.7
2286 Male, age 75, left hemisphere 36.5
2824 Male, age 61, right hemisphere 36.4
1783 Male, age 74, unknown 36.2
2732 Male, age 80, right hemisphere 29.7
Nucleus basalis of Meynert
nTPM: 32.7
2393 Male, age 80, right hemisphere 37.3
2484 Female, age 94, left hemisphere 35.0
2821 Male, age 75, both hemispheres 34.1
2569 Male, age 61, both hemispheres 24.5
Nucleus of the diagonal band
nTPM: 42.7
2775 Male, age 80, right hemisphere 48.4
1812 Female, age 91, both hemispheres 45.1
2195 Female, age 85, both hemispheres 43.4
2029 Male, age 61, right hemisphere 41.3
1979 Male, age 74, unknown 35.2
Olfactory tubercle
nTPM: 39.7
1846 Male, age 80, right hemisphere 42.8
1998 Female, age 91, both hemispheres 42.8
2487 Female, age 94, left hemisphere 37.0
2856 Male, age 75, right hemisphere 36.2
Putamen
nTPM: 36.1
2466 Female, age 79, unknown 43.0
1838 Male, age 80, right hemisphere 40.7
1937 Female, age 91, right hemisphere 38.1
1829 Male, age 74, unknown 36.9
2482 Female, age 94, left hemisphere 34.5
2647 Male, age 75, left hemisphere 31.3
2489 Female, age 72, unknown 28.4
Septal nuclei
nTPM: 39.2
2031 Female, age 72, unknown 50.3
1960 Male, age 74, unknown 44.2
2009 Female, age 91, both hemispheres 41.0
2629 Female, age 94, right hemisphere 39.5
2199 Male, age 80, right hemisphere 34.3
2059 Female, age 85, both hemispheres 32.8
2394 Male, age 61, left hemisphere 32.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 48.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 44.9
Samples: 246

Max nTPM: 142.0
Min nTPM: 14.1
Std nTPM: 17.8
Median nTPM: 42.3
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 142.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 104.6
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 95.9
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 94.3
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 91.7
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 89.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 84.3
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 79.8
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 76.8
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 76.8
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 76.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 48.4
Samples: 246

Max nTPM: 94.4
Min nTPM: 15.4
Std nTPM: 15.2
Median nTPM: 49.1
GTEX-TSE9-0011-R6A-SM-3DB7L 60-69 years, female 94.4
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 92.1
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 81.6
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 78.3
GTEX-1OJC4-0011-R6a-SM-EXOIM 50-59 years, female 78.2
GTEX-14E7W-0011-R6b-SM-5ZZV3 70-79 years, male 76.3
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 75.5
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 75.4
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 74.6
GTEX-1HT8W-0011-R6a-SM-CM2SY 30-39 years, male 74.6
GTEX-T6MN-0011-R6A-SM-32QP8 50-59 years, male 74.3
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Brain - Putamen (basal ganglia)
Average nTPM: 43.5
Samples: 205

Max nTPM: 111.5
Min nTPM: 16.7
Std nTPM: 15.9
Median nTPM: 41.2
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 111.5
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 95.5
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 79.7
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 79.2
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 77.4
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 77.2
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 76.9
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 73.4
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 73.3
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 71.9
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 71.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 126.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 80.1
FF:10164-103B2 76 years, female 80.1
Globus pallidus
Scaled Tags Per Million: 46.5
FF:10161-103A8 76 years, female 48.9
FF:10175-103C4 60 years, female 44.2
Nucleus accumbens
Scaled Tags Per Million: 126.7
FF:10037-101F1 23-56 years, mixed 126.7
Putamen
Scaled Tags Per Million: 103.8
FF:10176-103C5 60 years, female 103.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 33.5
Pig sample Sample description nTPM
Caudate
nTPM: 28.3
Samples: 4

Max nTPM: 33.3
Min nTPM: 23.7
Sample A Female 29.3
Sample B Female 23.7
Sample C Male 33.3
Sample D Male 26.7
Putamen
nTPM: 33.6
Samples: 4

Max nTPM: 56.8
Min nTPM: 24.0
Sample A Female 24.0
Sample B Female 27.7
Sample C Male 56.8
Sample D Male 25.8
Septum
nTPM: 32.0
Samples: 4

Max nTPM: 39.8
Min nTPM: 26.2
Sample A Female 29.0
Sample B Female 26.2
Sample C Male 33.0
Sample D Male 39.8
Ventral pallidum
nTPM: 28.2
Samples: 4

Max nTPM: 31.4
Min nTPM: 23.3
Sample A Female 28.6
Sample B Female 29.3
Sample C Male 31.4
Sample D Male 23.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 98.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 71.8
Samples: 4

Max nTPM: 76.6
Min nTPM: 67.3
Sample A Male 75.6
Sample B Male 67.3
Sample C Female 76.6
Sample D Female 67.8
Septum
nTPM: 98.5
Samples: 4

Max nTPM: 110.7
Min nTPM: 84.7
Sample A Male 84.7
Sample B Male 110.7
Sample C Female 94.2
Sample D Female 104.2
Ventral forebrain
nTPM: 76.4
Samples: 4

Max nTPM: 78.3
Min nTPM: 74.1
Sample A Male 75.0
Sample B Male 78.2
Sample C Female 74.1
Sample D Female 78.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 10.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 10.3
71608294 Antisense, RP_050927_01_D09, Mouse strain C57BL/6J (56 days, male) 12.0
293038 Antisense, RP_040609_01_F01, Mouse strain C57BL/6J (56 days, male) 8.6
Pallidum
Expression energy: 8.8
71608294 Antisense, RP_050927_01_D09, Mouse strain C57BL/6J (56 days, male) 9.6
293038 Antisense, RP_040609_01_F01, Mouse strain C57BL/6J (56 days, male) 8.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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