BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: High
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:38.1 nTPM
HPA:38.1 nTPM
GTEx:29.1 nTPM
FANTOM5:84.6 Scaled Tags Per Million
Pig:19.4 nTPM
Mouse:22.7 nTPM
Allen mouse:12.4 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA061442
Glial cells Not detected
Neuronal cells High



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 38.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 38.1
2288 Male, age 75, left hemisphere 40.2
2846 Female, age 79, unknown 39.6
2290 Female, age 72, unknown 39.0
2481 Female, age 94, left hemisphere 37.9
2289 Male, age 61, right hemisphere 37.7
1857 Female, age 85, left hemisphere 37.5
1854 Male, age 80, left hemisphere 36.7
1781 Male, age 74, unknown 36.0
Claustrum
nTPM: 35.8
2292 Female, age 85, both hemispheres 37.3
1956 Male, age 74, unknown 37.2
2196 Female, age 79, unknown 36.7
2284 Female, age 91, both hemispheres 36.4
2198 Male, age 80, both hemispheres 36.3
2491 Male, age 75, both hemispheres 35.7
2392 Female, age 94, both hemispheres 35.6
2645 Female, age 72, unknown 33.8
2568 Male, age 61, both hemispheres 33.6
Globus pallidus, externus
nTPM: 35.0
1996 Male, age 80, right hemisphere 35.7
2772 Female, age 79, unknown 35.2
2395 Male, age 75, both hemispheres 34.9
2567 Female, age 72, unknown 34.9
2646 Male, age 61, right hemisphere 34.5
Globus pallidus, internus
nTPM: 36.2
2287 Male, age 75, right hemisphere 39.3
2111 Female, age 85, right hemisphere 36.6
1818 Male, age 74, unknown 35.9
2778 Female, age 91, both hemispheres 35.9
2037 Male, age 80, right hemisphere 35.5
2483 Female, age 94, right hemisphere 35.4
2566 Female, age 72, unknown 34.9
Nucleus accumbens
nTPM: 37.6
2286 Male, age 75, left hemisphere 39.3
2391 Female, age 94, left hemisphere 38.9
2698 Female, age 72, unknown 37.7
1783 Male, age 74, unknown 37.3
1856 Female, age 91, right hemisphere 37.3
1806 Female, age 85, left hemisphere 37.1
2824 Male, age 61, right hemisphere 36.9
2732 Male, age 80, right hemisphere 36.2
Nucleus basalis of Meynert
nTPM: 36.1
2393 Male, age 80, right hemisphere 37.8
2821 Male, age 75, both hemispheres 37.4
2484 Female, age 94, left hemisphere 35.7
2569 Male, age 61, both hemispheres 33.5
Nucleus of the diagonal band
nTPM: 36.5
1812 Female, age 91, both hemispheres 37.4
2195 Female, age 85, both hemispheres 37.0
1979 Male, age 74, unknown 36.7
2029 Male, age 61, right hemisphere 36.4
2775 Male, age 80, right hemisphere 35.0
Olfactory tubercle
nTPM: 35.9
2856 Male, age 75, right hemisphere 36.6
1846 Male, age 80, right hemisphere 36.3
2487 Female, age 94, left hemisphere 35.5
1998 Female, age 91, both hemispheres 35.4
Putamen
nTPM: 37.5
1829 Male, age 74, unknown 39.2
2482 Female, age 94, left hemisphere 38.7
1838 Male, age 80, right hemisphere 38.0
2466 Female, age 79, unknown 37.7
1937 Female, age 91, right hemisphere 37.0
2489 Female, age 72, unknown 36.7
2647 Male, age 75, left hemisphere 35.3
Septal nuclei
nTPM: 35.1
2629 Female, age 94, right hemisphere 39.2
2009 Female, age 91, both hemispheres 36.3
2199 Male, age 80, right hemisphere 35.4
1960 Male, age 74, unknown 35.1
2031 Female, age 72, unknown 34.3
2059 Female, age 85, both hemispheres 32.6
2394 Male, age 61, left hemisphere 32.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 29.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 28.5
Samples: 246

Max nTPM: 47.6
Min nTPM: 14.4
Std nTPM: 4.9
Median nTPM: 27.6
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 47.6
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 45.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 44.2
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 43.5
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 43.4
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 43.3
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 41.4
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 40.6
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 40.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 39.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 39.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 29.1
Samples: 246

Max nTPM: 50.6
Min nTPM: 14.4
Std nTPM: 5.0
Median nTPM: 28.5
GTEX-1EWIQ-0011-R6a-SM-ARU8G 70-79 years, female 50.6
GTEX-1HBPM-0011-R6b-SM-ARU73 60-69 years, female 46.5
GTEX-1H4P4-0011-R6a-SM-ARZLR 50-59 years, male 44.3
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 43.0
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 42.2
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 42.1
GTEX-RU72-0011-R6A-SM-2TF71 50-59 years, female 42.1
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 41.3
GTEX-OHPN-0011-R6A-SM-2I5FH 60-69 years, female 40.6
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 40.6
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 40.5
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Brain - Putamen (basal ganglia)
Average nTPM: 28.8
Samples: 205

Max nTPM: 55.8
Min nTPM: 15.2
Std nTPM: 5.0
Median nTPM: 28.0
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 55.8
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 42.7
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 42.0
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 41.2
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 40.3
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 40.0
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 39.3
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 39.2
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 39.0
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 38.9
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 38.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 84.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 54.0
FF:10164-103B2 76 years, female 54.0
Globus pallidus
Scaled Tags Per Million: 51.4
FF:10161-103A8 76 years, female 57.9
FF:10175-103C4 60 years, female 44.9
Nucleus accumbens
Scaled Tags Per Million: 42.0
FF:10037-101F1 23-56 years, mixed 42.0
Putamen
Scaled Tags Per Million: 84.6
FF:10176-103C5 60 years, female 84.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 19.4
Pig sample Sample description nTPM
Caudate
nTPM: 15.6
Samples: 4

Max nTPM: 18.1
Min nTPM: 14.1
Sample A Female 15.7
Sample B Female 14.1
Sample C Male 18.1
Sample D Male 14.6
Putamen
nTPM: 19.4
Samples: 4

Max nTPM: 26.4
Min nTPM: 15.4
Sample A Female 15.4
Sample B Female 17.6
Sample C Male 26.4
Sample D Male 18.2
Septum
nTPM: 16.7
Samples: 4

Max nTPM: 18.0
Min nTPM: 15.0
Sample A Female 15.0
Sample B Female 16.9
Sample C Male 17.0
Sample D Male 18.0
Ventral pallidum
nTPM: 15.8
Samples: 4

Max nTPM: 17.7
Min nTPM: 13.3
Sample A Female 13.3
Sample B Female 17.7
Sample C Male 16.7
Sample D Male 15.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 22.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 22.7
Samples: 4

Max nTPM: 24.8
Min nTPM: 21.6
Sample A Male 21.6
Sample B Male 22.1
Sample C Female 24.8
Sample D Female 22.4
Septum
nTPM: 19.5
Samples: 4

Max nTPM: 20.6
Min nTPM: 18.2
Sample A Male 20.6
Sample B Male 18.2
Sample C Female 19.1
Sample D Female 20.2
Ventral forebrain
nTPM: 21.0
Samples: 4

Max nTPM: 23.3
Min nTPM: 19.1
Sample A Male 23.3
Sample B Male 19.4
Sample C Female 19.1
Sample D Female 22.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 12.4
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 12.4
69353633 Antisense, RP_050412_02_D07, Mouse strain C57BL/6J (56 days, male) 12.4
Pallidum
Expression energy: 10.8
69353633 Antisense, RP_050412_02_D07, Mouse strain C57BL/6J (56 days, male) 10.8

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The Human Protein Atlas

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