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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:55.0 nTPM
HPA:55.0 nTPM
GTEx:48.5 nTPM
FANTOM5:117.3 Scaled Tags Per Million
Pig:26.8 nTPM
Mouse:8.1 nTPM

AMYGDALA - HPA Brain RNA-seq
Max nTPM 55.0
Sample id Sample description nTPM
Amygdala
nTPM: 51.3
2695 Female, age 67, right hemisphere 59.2
1987 Female, age 91, left hemisphere 50.9
2514 Male, age 75, right hemisphere 50.3
2517 Female, age 94, left hemisphere 48.5
2814 Male, age 76, right hemisphere 47.8
Basal amygdala
nTPM: 48.0
2827 Female, age 67, right hemisphere 54.9
2609 Male, age 75, right hemisphere 52.1
2685 Female, age 94, left hemisphere 46.5
2110 Male, age 80, left hemisphere 45.4
1955 Male, age 76, both hemispheres 45.1
2243 Female, age 91, right hemisphere 44.2
Central amygdala
nTPM: 55.0
2826 Female, age 94, left hemisphere 74.6
2515 Male, age 75, right hemisphere 60.0
1905 Male, age 76, both hemispheres 50.7
2239 Male, age 80, left hemisphere 45.1
2701 Female, age 91, right hemisphere 44.7
Corticomedial amygdala
nTPM: 46.7
2428 Male, age 75, right hemisphere 51.0
2535 Female, age 67, right hemisphere 48.9
2242 Female, age 91, right hemisphere 48.8
2829 Male, age 80, left hemisphere 47.0
2240 Male, age 76, both hemispheres 43.2
2429 Female, age 94, left hemisphere 41.3
Lateral amygdala
nTPM: 53.7
2830 Female, age 67, right hemisphere 61.9
2256 Male, age 80, left hemisphere 57.7
2516 Male, age 75, right hemisphere 56.1
2534 Female, age 94, left hemisphere 54.8
1883 Male, age 76, both hemispheres 47.6
2255 Female, age 91, right hemisphere 44.3
Stria terminalis, bed nucleus
nTPM: 39.5
2201 Male, age 74, unknown 41.9
1974 Female, age 91, both hemispheres 40.4
2486 Female, age 94, both hemispheres 36.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 48.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 48.5
Samples: 152

Max nTPM: 121.8
Min nTPM: 21.2
Std nTPM: 20.1
Median nTPM: 43.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 121.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 111.5
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 107.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 93.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 92.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 90.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 88.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 87.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 87.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 86.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 84.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 83.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 83.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 82.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 79.7
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 78.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 76.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 75.9
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 74.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 73.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 72.2
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 72.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 71.8
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 70.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 70.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 69.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 68.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 67.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 67.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 66.2
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 66.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 65.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 64.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 62.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 61.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 60.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 60.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 60.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 59.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 59.1
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 57.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 57.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 56.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 55.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 54.6
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 54.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 54.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 53.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 52.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 52.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 52.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 52.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 52.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 51.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 49.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 49.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 49.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 49.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 48.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 48.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 47.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 46.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 46.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 46.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 46.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 45.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 45.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 45.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 45.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 45.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 44.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 44.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 44.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 44.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 43.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 43.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 43.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 43.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 43.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 42.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 42.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 42.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 41.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 41.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 41.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 41.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 40.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 39.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 39.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 39.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 39.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 38.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 38.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 38.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 38.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 37.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 37.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 36.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 36.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 36.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 36.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 36.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 36.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 36.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 35.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 35.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 35.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 35.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 34.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 34.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 34.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 34.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 34.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 34.1
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 34.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 33.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 33.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 33.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 33.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 33.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 32.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 32.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 31.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 30.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 29.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 29.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 29.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 29.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 29.1
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 28.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 28.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 28.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 28.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 28.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 27.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 27.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 27.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 27.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 26.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 26.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 26.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 25.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 25.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 24.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 24.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 24.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 22.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 22.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 21.8
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 21.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 21.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 21.2
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 117.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 117.3
FF:10151-102I7 76 years, female 117.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 26.8
Pig sample Sample description nTPM
Amygdala
nTPM: 26.8
Samples: 4

Max nTPM: 27.8
Min nTPM: 26.3
Sample A Female 26.7
Sample B Female 26.3
Sample C Male 26.4
Sample D Male 27.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 8.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 8.1
Samples: 4

Max nTPM: 11.5
Min nTPM: 6.1
Sample A Male 6.1
Sample B Male 7.2
Sample C Female 11.5
Sample D Female 7.7

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