MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:11.6 nTPM
HPA:11.6 nTPM
GTEx:24.0 nTPM
FANTOM5:142.1 Scaled Tags Per Million
Pig:50.9 nTPM
Mouse:61.3 nTPM
Allen mouse:0.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 11.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 8.2
2019 Male, age 18, unknown 26.2
2411 Female, age 72, unknown 8.1
1830 Male, age 51, unknown 7.6
2586 Male, age 75, left hemisphere 6.4
2666 Male, age 74, left hemisphere 6.3
1870 Female, age 42, unknown 6.2
2828 Female, age 72, unknown 6.2
2219 Male, age 76, both hemispheres 5.4
1827 Male, age 72, unknown 5.0
1833 Male, age 53, unknown 4.6
Dorsal raphe nucleus
nTPM: 5.5
2750 Male, age 76, both hemispheres 9.9
1828 Male, age 53, unknown 8.2
2047 Male, age 72, unknown 5.2
2016 Female, age 72, unknown 2.7
2298 Female, age 72, unknown 1.6
Inferior colliculus
nTPM: 5.6
1890 Male, age 53, unknown 9.1
2097 Female, age 72, unknown 6.2
1848 Female, age 42, unknown 4.5
2849 Male, age 72, unknown 2.4
Median raphe nucleus
nTPM: 4.6
2220 Male, age 76, midline 4.6
Pedunculopontine tegmental nucleus
nTPM: 7.0
2338 Male, age 61, both hemispheres 8.0
2334 Male, age 80, both hemispheres 7.3
1921 Female, age 85, both hemispheres 5.8
Periaquaductal grey, anterior
nTPM: 3.4
2502 Female, age 75, unknown 4.0
1947 Male, age 18, unknown 3.1
1795 Male, age 51, unknown 3.0
Periaquaductal grey, dorsal
nTPM: 1.6
2464 Female, age 72, unknown 3.4
1831 Male, age 72, unknown 2.8
2850 Male, age 76, both hemispheres 0.3
1840 Male, age 53, unknown 0.0
Periaquaductal grey, lateral
nTPM: 2.5
2272 Male, age 74, both hemispheres 4.8
2053 Male, age 18, unknown 2.0
2140 Male, age 76, both hemispheres 0.6
Pretectal area
nTPM: 8.2
2007 Male, age 72, unknown 18.2
1817 Female, age 42, unknown 16.4
1944 Female, age 72, unknown 11.5
1816 Male, age 51, unknown 10.7
1815 Male, age 53, unknown 8.5
2667 Female, age 75, unknown 6.8
2407 Male, age 75, both hemispheres 6.4
2273 Male, age 74, both hemispheres 4.6
2316 Male, age 76, right hemisphere 4.2
2224 Female, age 72, unknown 1.7
2825 Male, age 18, unknown 1.7
Red nucleus
nTPM: 11.6
2785 Male, age 18, unknown 21.5
1865 Male, age 51, unknown 13.2
2823 Male, age 76, right hemisphere 13.2
2588 Male, age 74, left hemisphere 13.1
1821 Female, age 72, unknown 12.0
2584 Male, age 75, left hemisphere 11.9
2769 Male, age 72, unknown 10.8
2227 Male, age 72, unknown 10.6
1954 Female, age 42, unknown 9.0
2503 Female, age 72, unknown 8.9
1904 Male, age 53, unknown 8.4
2725 Female, age 75, unknown 6.5
Substantia nigra
nTPM: 6.5
1941 Male, age 53, unknown 15.0
1889 Female, age 72, unknown 11.9
2583 Male, age 75, right hemisphere 9.4
2590 Female, age 75, unknown 7.1
1851 Male, age 51, unknown 5.6
1916 Female, age 42, unknown 4.4
2409 Female, age 72, unknown 4.3
2665 Male, age 74, both hemispheres 4.1
2699 Male, age 18, unknown 1.9
2241 Male, age 72, unknown 1.8
Superior colliculus
nTPM: 6.4
2087 Female, age 72, unknown 8.8
1995 Male, age 72, unknown 8.6
2587 Male, age 74, left hemisphere 8.4
1913 Female, age 42, unknown 7.9
2668 Female, age 75, unknown 7.8
1895 Male, age 76, right hemisphere 5.8
2261 Male, age 18, unknown 5.3
1839 Male, age 51, unknown 4.6
1796 Male, age 53, unknown 4.4
2664 Male, age 75, both hemispheres 2.8
Ventral tegmental area
nTPM: 6.0
2223 Female, age 72, unknown 11.7
2410 Female, age 72, unknown 7.7
2218 Male, age 76, both hemispheres 6.2
1942 Male, age 51, unknown 3.9
1915 Female, age 42, unknown 3.5
2021 Male, age 53, unknown 2.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 24.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 24.0
Samples: 139

Max nTPM: 105.3
Min nTPM: 5.1
Std nTPM: 16.9
Median nTPM: 19.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 105.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 103.0
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 84.2
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 77.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 63.6
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 63.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 57.6
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 55.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 53.9
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 50.1
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 47.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 142.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 142.1
FF:10158-103A5 76 years, female 142.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 50.9
Pig sample Sample description nTPM
Midbrain
nTPM: 39.5
Samples: 4

Max nTPM: 63.1
Min nTPM: 17.1
Sample A Female 55.1
Sample B Female 17.1
Sample C Male 63.1
Sample D Male 22.7
Periaqueductal gray
nTPM: 12.0
Samples: 3

Max nTPM: 14.7
Min nTPM: 10.2
Sample B Female 14.7
Sample C Male 11.0
Sample D Male 10.2
Substantia nigra
nTPM: 20.8
Samples: 4

Max nTPM: 27.8
Min nTPM: 11.8
Sample A Female 27.8
Sample B Female 11.8
Sample C Male 16.0
Sample D Male 27.4
Superior colliculi
nTPM: 50.9
Samples: 4

Max nTPM: 106.9
Min nTPM: 20.2
Sample A Female 42.1
Sample B Female 20.2
Sample C Male 106.9
Sample D Male 34.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 61.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 61.3
Samples: 4

Max nTPM: 65.2
Min nTPM: 59.2
Sample A Male 59.2
Sample B Male 60.8
Sample C Female 65.2
Sample D Female 60.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
956 Antisense, RP_Baylor_103030, Mouse strain C57BL/6J (56 days, male) 1.0
955 Antisense, RP_Baylor_103030, Mouse strain C57BL/6J (56 days, male) 1.0
957 Sense, RPS_Baylor_37043, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.