MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:16.1 nTPM
HPA:16.1 nTPM
GTEx:16.2 nTPM
FANTOM5:16.5 Scaled Tags Per Million
Mouse:14.7 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 16.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 14.8
2666 Male, age 74, left hemisphere 19.3
1827 Male, age 72, unknown 16.3
2828 Female, age 72, unknown 16.3
1870 Female, age 42, unknown 14.5
2019 Male, age 18, unknown 14.5
2219 Male, age 76, both hemispheres 14.4
1830 Male, age 51, unknown 14.0
2411 Female, age 72, unknown 14.0
1833 Male, age 53, unknown 13.3
2586 Male, age 75, left hemisphere 11.8
Dorsal raphe nucleus
nTPM: 13.4
2750 Male, age 76, both hemispheres 14.6
2016 Female, age 72, unknown 13.9
2298 Female, age 72, unknown 13.2
1828 Male, age 53, unknown 12.9
2047 Male, age 72, unknown 12.3
Inferior colliculus
nTPM: 13.8
2097 Female, age 72, unknown 14.7
1848 Female, age 42, unknown 13.8
1890 Male, age 53, unknown 13.5
2849 Male, age 72, unknown 13.4
Median raphe nucleus
nTPM: 12.9
2220 Male, age 76, midline 12.9
Pedunculopontine tegmental nucleus
nTPM: 14.4
2334 Male, age 80, both hemispheres 14.7
1921 Female, age 85, both hemispheres 14.2
2338 Male, age 61, both hemispheres 14.2
Periaquaductal grey, anterior
nTPM: 14.2
1795 Male, age 51, unknown 14.5
1947 Male, age 18, unknown 14.1
2502 Female, age 75, unknown 14.1
Periaquaductal grey, dorsal
nTPM: 13.2
1831 Male, age 72, unknown 14.2
2464 Female, age 72, unknown 13.9
2850 Male, age 76, both hemispheres 12.5
1840 Male, age 53, unknown 12.1
Periaquaductal grey, lateral
nTPM: 13.4
2272 Male, age 74, both hemispheres 13.9
2053 Male, age 18, unknown 13.5
2140 Male, age 76, both hemispheres 12.7
Pretectal area
nTPM: 14.1
1944 Female, age 72, unknown 15.9
1816 Male, age 51, unknown 15.6
1817 Female, age 42, unknown 15.0
2007 Male, age 72, unknown 14.9
1815 Male, age 53, unknown 14.6
2224 Female, age 72, unknown 13.9
2825 Male, age 18, unknown 13.8
2316 Male, age 76, right hemisphere 13.6
2667 Female, age 75, unknown 13.4
2273 Male, age 74, both hemispheres 12.6
2407 Male, age 75, both hemispheres 11.6
Red nucleus
nTPM: 15.1
2588 Male, age 74, left hemisphere 19.3
2823 Male, age 76, right hemisphere 16.2
1954 Female, age 42, unknown 16.1
2503 Female, age 72, unknown 15.4
1865 Male, age 51, unknown 15.3
1821 Female, age 72, unknown 15.0
2725 Female, age 75, unknown 14.9
2227 Male, age 72, unknown 14.8
2769 Male, age 72, unknown 14.7
1904 Male, age 53, unknown 14.2
2785 Male, age 18, unknown 13.6
2584 Male, age 75, left hemisphere 12.1
Substantia nigra
nTPM: 16.1
2665 Male, age 74, both hemispheres 21.5
1941 Male, age 53, unknown 20.4
2699 Male, age 18, unknown 17.0
1851 Male, age 51, unknown 15.3
1916 Female, age 42, unknown 15.0
2590 Female, age 75, unknown 15.0
1889 Female, age 72, unknown 14.8
2241 Male, age 72, unknown 14.8
2409 Female, age 72, unknown 14.5
2583 Male, age 75, right hemisphere 13.1
Superior colliculus
nTPM: 14.3
2587 Male, age 74, left hemisphere 16.8
2668 Female, age 75, unknown 15.5
2087 Female, age 72, unknown 15.3
1895 Male, age 76, right hemisphere 14.6
2261 Male, age 18, unknown 14.6
1796 Male, age 53, unknown 14.4
1913 Female, age 42, unknown 14.0
1995 Male, age 72, unknown 13.3
1839 Male, age 51, unknown 12.9
2664 Male, age 75, both hemispheres 11.4
Ventral tegmental area
nTPM: 15.5
2218 Male, age 76, both hemispheres 17.5
1915 Female, age 42, unknown 16.1
2021 Male, age 53, unknown 15.9
2410 Female, age 72, unknown 15.5
1942 Male, age 51, unknown 15.4
2223 Female, age 72, unknown 12.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 16.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 16.2
Samples: 139

Max nTPM: 93.4
Min nTPM: 1.6
Std nTPM: 11.6
Median nTPM: 12.8
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 93.4
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 66.8
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 57.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 42.6
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 41.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 36.7
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 34.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 31.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 30.8
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 30.2
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 30.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 16.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 16.5
FF:10158-103A5 76 years, female 16.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 14.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 14.7
Samples: 4

Max nTPM: 15.7
Min nTPM: 13.9
Sample A Male 15.0
Sample B Male 15.7
Sample C Female 13.9
Sample D Female 14.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
69526665 Antisense, RP_050421_01_D03, Mouse strain C57BL/6J (56 days, male) 0.3
72283800 Antisense, RP_051027_01_B06, Mouse strain C57BL/6J (56 days, male) 0.1

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