MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:4.4 nTPM
HPA:4.4 nTPM
GTEx:5.5 nTPM
FANTOM5:13.8 Scaled Tags Per Million
Pig:11.5 nTPM
Mouse:5.5 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 4.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 3.7
2586 Male, age 75, left hemisphere 4.7
1833 Male, age 53, unknown 4.5
1830 Male, age 51, unknown 4.0
1870 Female, age 42, unknown 3.7
2019 Male, age 18, unknown 3.6
2411 Female, age 72, unknown 3.6
2828 Female, age 72, unknown 3.6
1827 Male, age 72, unknown 3.4
2666 Male, age 74, left hemisphere 3.1
2219 Male, age 76, both hemispheres 2.8
Dorsal raphe nucleus
nTPM: 4.3
2298 Female, age 72, unknown 5.2
2016 Female, age 72, unknown 4.5
1828 Male, age 53, unknown 4.2
2047 Male, age 72, unknown 4.0
2750 Male, age 76, both hemispheres 3.5
Inferior colliculus
nTPM: 3.7
1848 Female, age 42, unknown 4.0
1890 Male, age 53, unknown 3.9
2097 Female, age 72, unknown 3.6
2849 Male, age 72, unknown 3.2
Median raphe nucleus
nTPM: 3.8
2220 Male, age 76, midline 3.8
Pedunculopontine tegmental nucleus
nTPM: 4.2
2338 Male, age 61, both hemispheres 4.7
2334 Male, age 80, both hemispheres 4.5
1921 Female, age 85, both hemispheres 3.4
Periaquaductal grey, anterior
nTPM: 3.2
1795 Male, age 51, unknown 3.8
2502 Female, age 75, unknown 3.0
1947 Male, age 18, unknown 2.8
Periaquaductal grey, dorsal
nTPM: 3.8
2850 Male, age 76, both hemispheres 5.0
1831 Male, age 72, unknown 4.0
2464 Female, age 72, unknown 3.6
1840 Male, age 53, unknown 2.8
Periaquaductal grey, lateral
nTPM: 3.9
2272 Male, age 74, both hemispheres 4.4
2140 Male, age 76, both hemispheres 4.2
2053 Male, age 18, unknown 3.2
Pretectal area
nTPM: 3.8
1817 Female, age 42, unknown 4.3
2273 Male, age 74, both hemispheres 4.2
2407 Male, age 75, both hemispheres 4.1
2825 Male, age 18, unknown 4.0
1944 Female, age 72, unknown 3.9
2224 Female, age 72, unknown 3.9
2667 Female, age 75, unknown 3.9
1815 Male, age 53, unknown 3.4
1816 Male, age 51, unknown 3.4
2316 Male, age 76, right hemisphere 3.4
2007 Male, age 72, unknown 2.9
Red nucleus
nTPM: 4.4
1954 Female, age 42, unknown 5.9
2769 Male, age 72, unknown 5.3
2823 Male, age 76, right hemisphere 4.9
1904 Male, age 53, unknown 4.8
2227 Male, age 72, unknown 4.7
2725 Female, age 75, unknown 4.5
2503 Female, age 72, unknown 4.4
1821 Female, age 72, unknown 4.2
2785 Male, age 18, unknown 3.8
2588 Male, age 74, left hemisphere 3.7
1865 Male, age 51, unknown 3.4
2584 Male, age 75, left hemisphere 3.0
Substantia nigra
nTPM: 3.6
2699 Male, age 18, unknown 5.2
1916 Female, age 42, unknown 4.0
1851 Male, age 51, unknown 3.9
2665 Male, age 74, both hemispheres 3.7
2590 Female, age 75, unknown 3.5
1941 Male, age 53, unknown 3.3
2583 Male, age 75, right hemisphere 3.3
2241 Male, age 72, unknown 3.2
1889 Female, age 72, unknown 3.1
2409 Female, age 72, unknown 2.9
Superior colliculus
nTPM: 3.9
1995 Male, age 72, unknown 5.2
1913 Female, age 42, unknown 4.4
1839 Male, age 51, unknown 3.9
2261 Male, age 18, unknown 3.9
2668 Female, age 75, unknown 3.8
1796 Male, age 53, unknown 3.7
2087 Female, age 72, unknown 3.7
2664 Male, age 75, both hemispheres 3.6
1895 Male, age 76, right hemisphere 3.5
2587 Male, age 74, left hemisphere 3.0
Ventral tegmental area
nTPM: 3.8
2021 Male, age 53, unknown 4.4
2218 Male, age 76, both hemispheres 4.2
1942 Male, age 51, unknown 3.7
2223 Female, age 72, unknown 3.7
2410 Female, age 72, unknown 3.6
1915 Female, age 42, unknown 3.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 5.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 5.5
Samples: 139

Max nTPM: 15.9
Min nTPM: 0.0
Std nTPM: 2.6
Median nTPM: 4.8
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 15.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 12.1
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 11.7
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 11.5
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 11.2
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 11.1
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 11.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 10.7
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 10.2
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 10.2
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 10.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 13.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 13.8
FF:10158-103A5 76 years, female 13.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 11.5
Pig sample Sample description nTPM
Midbrain
nTPM: 8.5
Samples: 4

Max nTPM: 11.6
Min nTPM: 6.6
Sample A Female 11.6
Sample B Female 8.3
Sample C Male 7.4
Sample D Male 6.6
Periaqueductal gray
nTPM: 10.9
Samples: 3

Max nTPM: 13.5
Min nTPM: 8.6
Sample B Female 8.6
Sample C Male 13.5
Sample D Male 10.7
Substantia nigra
nTPM: 11.5
Samples: 4

Max nTPM: 12.6
Min nTPM: 9.7
Sample A Female 12.3
Sample B Female 11.3
Sample C Male 12.6
Sample D Male 9.7
Superior colliculi
nTPM: 9.8
Samples: 4

Max nTPM: 12.8
Min nTPM: 6.7
Sample A Female 10.2
Sample B Female 12.8
Sample C Male 6.7
Sample D Male 9.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 5.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 5.5
Samples: 4

Max nTPM: 6.3
Min nTPM: 5.0
Sample A Male 5.5
Sample B Male 6.3
Sample C Female 5.2
Sample D Female 5.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
68342402 Antisense, RP_041214_01_C12, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.